Alternatives and similar repositories for pfasta

Users that are interested in pfasta are comparing it to the libraries listed below

• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆31Updated 3 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆30Updated 3 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 3 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 3 years ago
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 8 years ago
• ITBE-Lab / MA
  The Modular Aligner and The Modular SV Caller
  ☆46Updated 2 years ago
• phasegenomics / polar_star
  long-read depth breaking
  ☆11Updated 7 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 3 months ago
• medvedevgroup / BubbZ
  ☆15Updated 5 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated 5 months ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆30Updated 5 years ago
• broadinstitute / pyfrost
  Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API
  ☆27Updated 2 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 6 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 5 years ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆34Updated 7 years ago
• ocxtal / adaptivebandbench
  Benchmark on adaptive banded algorithm
  ☆20Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 6 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• lh3 / rtgeval
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Updated 9 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 9 years ago
• JialiUMassWengLab / laSV
  laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…
  ☆12Updated 9 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated last year
• COMBINE-lab / rainbowfish
  A succinct colored dBG representation
  ☆12Updated 7 years ago