kloetzl / pfastaLinks
A Pedantic FASTA Parser and Tool Set
☆14Updated 5 years ago
Alternatives and similar repositories for pfasta
Users that are interested in pfasta are comparing it to the libraries listed below
Sorting:
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 6 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Find Unique genomic Regions☆32Updated last month
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- ☆15Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆28Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- A succinct colored dBG representation☆12Updated 7 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- my PhD thesis☆36Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- ☆24Updated 6 months ago
- ☆15Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago