kloetzl / pfastaLinks
A Pedantic FASTA Parser and Tool Set
☆14Updated 5 years ago
Alternatives and similar repositories for pfasta
Users that are interested in pfasta are comparing it to the libraries listed below
Sorting:
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- ☆28Updated last month
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- ☆32Updated 2 years ago
- ☆31Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- De Bruijn graph representation in low memory☆36Updated 11 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 5 months ago
- ☆16Updated 7 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆15Updated 4 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- Python3 module for running MUMmer and reading the output☆32Updated 2 months ago