Alternatives and similar repositories for pfasta:

Users that are interested in pfasta are comparing it to the libraries listed below

• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated last year
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆29Updated 2 years ago
• hzi-bifo / Haploflow
  ☆29Updated last year
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 3 weeks ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆16Updated 5 months ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• nickloman / poredb
  ☆19Updated 7 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆24Updated 9 months ago
• xa6xa6 / metaOthello
  ☆16Updated 6 years ago
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆30Updated 6 years ago
• sanger-pathogens / pymummer
  Python3 module for running MUMmer and reading the output
  ☆31Updated 2 months ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆24Updated last year
• karel-brinda / NanoSim-H
  NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
  ☆17Updated 2 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 3 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• VGP / vgp-tools
  ☆28Updated last year
• donovan-h-parks / biolib
  Python package for common tasks in bioinformatic.
  ☆13Updated last year
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆19Updated 4 years ago