A Pedantic FASTA Parser and Tool Set
☆14Apr 22, 2020Updated 5 years ago
Alternatives and similar repositories for pfasta
Users that are interested in pfasta are comparing it to the libraries listed below
Sorting:
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated 8 months ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 3 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 2 years ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 9 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Tao Yan's Plot Toolkit☆12Aug 20, 2019Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Generic hash table library in C☆40Jan 2, 2026Updated 2 months ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆16Nov 20, 2024Updated last year
- Evolutionary Bioinformatics Toolkit (EBT)☆12Jul 14, 2020Updated 5 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 7 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)☆24Sep 4, 2017Updated 8 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- Multiplex PCR design, in silico☆19Mar 4, 2025Updated last year
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Aug 28, 2019Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- Munge GenBank files into FASTA and tab-separated metadata☆15Feb 5, 2026Updated last month
- FQSqueezer - FASTQ compressor based on k-mer statistics☆17Feb 24, 2024Updated 2 years ago
- NGS duplicate marking☆19Apr 6, 2021Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year