viq854 / licheeLinks
Multi-sample cancer phylogeny reconstruction
☆36Updated 8 years ago
Alternatives and similar repositories for lichee
Users that are interested in lichee are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 9 months ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated last year
- DriverPower☆26Updated 11 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- ☆36Updated 6 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆24Updated last year
- ☆33Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 10 months ago