Alternatives and similar repositories for minialign

Users that are interested in minialign are comparing it to the libraries listed below

• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 6 months ago
• thegenemyers / DAMAPPER
  Long read to reference genome mapping tool
  ☆13Updated last year
• mariokostelac / ra-integrate
  DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)
  ☆18Updated 9 years ago
• VGP / vgp-tools
  ☆28Updated last month
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• lh3 / rtgeval
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Updated 9 years ago
• mchaisso / mcutils
  ☆12Updated 3 weeks ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• md5sam / Falcon2Fastg
  Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage
  ☆13Updated 9 years ago
• uio-bmi / two_step_graph_mapper
  ☆21Updated 5 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• dfguan / rHAT
  Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
  ☆18Updated 6 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 3 months ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated 2 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 3 years ago
• swarris / Pacasus
  Correction of palindromes in long reads from PacBio and Nanopore
  ☆14Updated 3 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 4 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆24Updated last month
• benoukraflab / NanoVar---archived
  Archived version 1.0.2
  ☆16Updated 5 years ago