isovic / minialignLinks
Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
☆11Updated 8 years ago
Alternatives and similar repositories for minialign
Users that are interested in minialign are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- ☆28Updated 5 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 9 years ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆34Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- GBWT-based handle graph☆31Updated 2 months ago
- Library for the Handle Graph abstraction☆24Updated 3 weeks ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- ☆17Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Graph based multi genome aligner☆48Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- ☆13Updated 9 years ago