isovic / minialignLinks
Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
☆10Updated 7 years ago
Alternatives and similar repositories for minialign
Users that are interested in minialign are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago
- ☆12Updated 2 months ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 9 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- ☆17Updated 4 years ago
- ☆34Updated 5 years ago
- Long read to reference genome mapping tool☆13Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- ☆28Updated 2 months ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ☆15Updated 4 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago
- ☆21Updated 5 years ago
- General purpose utility related to GAF files☆28Updated 3 weeks ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last month
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year