ihh / trajectory-likelihoodLinks
Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
☆14Updated 2 years ago
Alternatives and similar repositories for trajectory-likelihood
Users that are interested in trajectory-likelihood are comparing it to the libraries listed below
Sorting:
- kProcessor: kmers processing framework.☆11Updated last year
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆38Updated last year
- ☆13Updated 7 months ago
- A Python library for interacting with ENA's API☆23Updated 3 years ago
- A Julia package for handle genome graph in the GFA format.☆11Updated 2 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- ☆10Updated 6 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- Local Lineage and Monophyly Assessment☆16Updated 3 years ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 5 months ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 4 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆14Updated 4 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆12Updated 6 years ago
- Phylogenetics toolkit for the PyData Ecosystem☆11Updated last year
- SeqOthello supports fast coverage query and containment query.☆12Updated 6 years ago
- K-mer counting algorithms and count-data utilities for the BioJulia framework☆11Updated 2 years ago
- SRA python tools☆11Updated 4 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- reference free variant assembly☆33Updated last year
- Variational Auto Encoders for learning binding signatures of transcription factors☆12Updated last year
- 🧬 Viral genome reference alignment☆12Updated 4 years ago
- Paired reads mapping on de Bruijn graph☆13Updated 6 years ago
- Bioinformatics Open Source Sequence machine☆33Updated last year