ihh / trajectory-likelihoodLinks
Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
☆14Updated 2 years ago
Alternatives and similar repositories for trajectory-likelihood
Users that are interested in trajectory-likelihood are comparing it to the libraries listed below
Sorting:
- ☆13Updated 10 months ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆39Updated last year
- A Python library for interacting with ENA's API☆23Updated 4 years ago
- A Julia package for handle genome graph in the GFA format.☆11Updated 2 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆26Updated 7 months ago
- Bioinformatics Open Source Sequence machine☆33Updated 2 years ago
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Updated 5 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- kProcessor: kmers processing framework.☆11Updated last year
- Phylogenetic inference using Stan☆23Updated 5 months ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 4 years ago
- A book for my course☆17Updated 9 months ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Local Lineage and Monophyly Assessment☆16Updated 4 years ago
- Paired reads mapping on de Bruijn graph☆13Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- Estimate linkage disequilibrium between unphased loci☆11Updated 10 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 7 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- reference free variant assembly☆34Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Automatically exported from code.google.com/p/macs☆16Updated 5 years ago
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago