A scalable machine learning pipeline for probe specificity prediction.
☆14Mar 20, 2026Updated last week
Alternatives and similar repositories for PaintSHOP_pipeline
Users that are interested in PaintSHOP_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- scripts for using spark on janelia's cluster☆13Nov 12, 2023Updated 2 years ago
- Deep Learning Library for Spot Detection☆22Oct 9, 2025Updated 5 months ago
- ☆29Apr 26, 2024Updated last year
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆24Feb 28, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Aug 1, 2021Updated 4 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Updated this week
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Jan 29, 2015Updated 11 years ago
- Generating interfaces(CLI, Qt GUI, Dash web app) from a Python function or a command program.☆41Apr 1, 2023Updated 2 years ago
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆22Jun 19, 2023Updated 2 years ago
- Packing circles into arbitrary shapes since 2019.☆16Nov 18, 2021Updated 4 years ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 6 months ago
- Deep learning based spot detection for FISH images.☆33Jan 7, 2026Updated 2 months ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 7 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- Implementation of Force2Vec method for ICDM 2020 paper titled "Force2Vec: Parallel force-directed graph embedding"☆14May 30, 2022Updated 3 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- A suite of Dash components for JBrowse's embeddable components☆14Jan 3, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆30Jun 30, 2024Updated last year
- Accessing AlphaMissense Data Resources in R☆13Nov 26, 2025Updated 4 months ago
- Front-end code for Serratus project website☆12Jul 2, 2024Updated last year
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- ☆11May 24, 2024Updated last year
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 4 months ago
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Mar 13, 2026Updated 2 weeks ago
- Deep learning embedding for nucleotide sequences☆20Mar 12, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 8 months ago
- DeepCell Kiosk Distribution for Kubernetes on GKE and AWS☆37Jul 12, 2023Updated 2 years ago
- Run shell commands in a scientifically reproducible and robust way☆24Feb 27, 2026Updated last month
- segmentation of rod-shaped bacteria☆15Mar 25, 2023Updated 3 years ago
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆12May 13, 2022Updated 3 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆22Sep 17, 2018Updated 7 years ago
- starfish: unified pipelines for image-based transcriptomics☆245Mar 19, 2026Updated last week