beliveau-lab / PaintSHOP_pipelineLinks
A scalable machine learning pipeline for probe specificity prediction.
☆14Updated last year
Alternatives and similar repositories for PaintSHOP_pipeline
Users that are interested in PaintSHOP_pipeline are comparing it to the libraries listed below
Sorting:
- ☆29Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆49Updated 3 years ago
- Toolbox for the analysis of smFISH images.☆62Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆79Updated 2 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆62Updated 3 weeks ago
- Analysis of smFISH data☆11Updated 6 years ago
- Spatial analysis of FISH data☆30Updated 2 weeks ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- ☆28Updated 7 months ago
- Interactive visualization of spatial omics data☆58Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- Repository for storing prototype functionality implementations for the BKP☆27Updated 2 weeks ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆25Updated 8 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- Image Mass Cytometry analysis pipeline☆25Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆15Updated this week
- Generate HCR-style Probe Pairs for mRNA visualization☆37Updated last year
- ☆19Updated this week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆91Updated this week
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆20Updated 7 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- Spatial Single-Cell Analysis Toolkit☆91Updated 3 weeks ago
- ☆35Updated 3 weeks ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆55Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆46Updated this week
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 7 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 10 months ago