JinLabBioinfo / DeepLoopLinks
DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data
☆32Updated 4 months ago
Alternatives and similar repositories for DeepLoop
Users that are interested in DeepLoop are comparing it to the libraries listed below
Sorting:
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 4 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated last month
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- ☆35Updated 2 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆27Updated 2 years ago
- Statistically Significant loops from HiChIP data☆44Updated last year
- ☆11Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 8 months ago
- ☆12Updated 3 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- ☆17Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- IDR☆31Updated 2 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆40Updated 8 months ago
- Micro DNA identification☆24Updated 4 years ago