ZhuangLab / MERFISH_analysis
Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
☆50Updated 3 years ago
Alternatives and similar repositories for MERFISH_analysis:
Users that are interested in MERFISH_analysis are comparing it to the libraries listed below
- Spatial analysis of FISH data☆30Updated 11 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- Single cell RNA-seq analysis for transcriptomic type characterization☆36Updated 2 weeks ago
- Repository for storing prototype functionality implementations for the BKP☆26Updated 2 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 9 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated 11 months ago
- ☆29Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆77Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆61Updated last week
- Spatial Single-Cell Analysis Toolkit☆90Updated 2 weeks ago
- ☆47Updated 4 months ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆20Updated 7 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Toolbox for the analysis of smFISH images.☆59Updated last year
- Python package for reading imaging mass cytometry (IMC) files☆15Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 3 months ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 7 years ago
- ☆28Updated 6 months ago
- ☆50Updated 4 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆27Updated this week
- Interactive visualization of spatial omics data☆53Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆77Updated last month
- ☆18Updated this week
- ☆35Updated last year
- ☆14Updated 3 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆47Updated 2 years ago
- ☆16Updated 9 months ago
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 9 months ago