vanvalenlab / deepcell-spotsLinks
Deep Learning Library for Spot Detection
☆20Updated 3 weeks ago
Alternatives and similar repositories for deepcell-spots
Users that are interested in deepcell-spots are comparing it to the libraries listed below
Sorting:
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
 - scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆97Updated last month
 - Deep learning based spot detection for FISH images.☆25Updated last month
 - An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
 - Interactive visualization of spatial omics data☆70Updated last week
 - An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated 3 weeks ago
 - TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
 - MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
 - Integrated pipeline for multiplexed image analysis☆98Updated 7 months ago
 - Toolbox for the analysis of smFISH images.☆67Updated 2 years ago
 - ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
 - EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
 - comseg☆24Updated 8 months ago
 - ☆27Updated last year
 - A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated this week
 - Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
 - ☆74Updated this week
 - Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
 - Single-cell spatial proteomics analysis that makes you happy!☆42Updated this week
 - Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
 - The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆34Updated last year
 - Self-Supervised Vision Transformers for multiplexed imaging datasets☆55Updated last year
 - Framework for image and flow cytometry analysis☆30Updated 3 weeks ago
 - Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
 - Tools and scripts for EASI-FISH image data analysis☆17Updated 3 years ago
 - Spatial Single-Cell Analysis Toolkit☆101Updated 4 months ago
 - Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
 - Multiple-choice microscopy pipeline☆137Updated last month
 - A toolkit for processing multiplexed tissue images☆65Updated 3 weeks ago
 - ☆55Updated 8 months ago