vanvalenlab / deepcell-spotsLinks
Deep Learning Library for Spot Detection
☆19Updated last year
Alternatives and similar repositories for deepcell-spots
Users that are interested in deepcell-spots are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 5 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- Interactive visualization of spatial omics data☆61Updated last week
- ☆27Updated 9 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated this week
- Framework for image and flow cytometry analysis☆27Updated 2 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated 2 weeks ago
- Multiple-choice microscopy pipeline☆133Updated 4 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- Toolbox for the analysis of smFISH images.☆68Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆91Updated 3 months ago
- Deep learning based spot detection for FISH images.☆23Updated last month
- Spatial Single-Cell Analysis Toolkit☆92Updated 2 weeks ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- A toolkit for processing multiplexed tissue images☆61Updated 3 weeks ago
- ☆29Updated last year
- A pipeline to transform images into valuable analysis items☆13Updated 3 weeks ago
- ☆63Updated 2 weeks ago
- comseg☆23Updated 5 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated 3 weeks ago
- Python API and Jupyter widget for Vitessce☆49Updated this week
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 3 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆30Updated last week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago