Alternatives and similar repositories for fasql

Users that are interested in fasql are comparing it to the libraries listed below

• wheretrue / exon-duckdb
  DuckDB Extension for working with bioinformatic data.
  ☆19Updated 2 years ago
• wheretrue / exon
  Exon is an OLAP query engine specifically for biology and life science applications.
  ☆71Updated 9 months ago
• hms-dbmi / upset-altair-notebook
  Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
  ☆31Updated 4 years ago
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated 2 weeks ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated 3 months ago
• wheretrue / biobear
  Work with bioinformatic files using Arrow, Polars, and/or DuckDB
  ☆193Updated 9 months ago
• miniwdl-ext / miniwdl-aws
  Extends miniwdl to run workflows on AWS Batch & EFS
  ☆22Updated last year
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 3 years ago
• depictio / depictio
  Bioinformatics web-platform visualisation dashboard creation
  ☆28Updated last month
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆69Updated 3 years ago
• caporaso-lab / cual-id
  A package for creating and managing sample identifiers in comparative -omics datasets.
  ☆23Updated 8 years ago
• domoritz / mosaic-motherduck
  ☆15Updated last year
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated 2 years ago
• greenelab / hclust
  Agglomerative hierarchical clustering in JavaScript
  ☆19Updated last year
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆147Updated last week
• manzt / scipy-2024-anywidget
  ☆26Updated last year
• trytoolchest / toolchest-client-python
  Toolchest Python client
  ☆15Updated 2 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆49Updated 2 years ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆48Updated this week
• visdesignlab / persist
  Persist is a JupyterLab extension to enable persistent interactive visualizations in JupyterLab notebooks.
  ☆46Updated 8 months ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆86Updated 3 weeks ago
• visdesignlab / upset2
  UpSet - Visualizing Intersecting Sets
  ☆71Updated 2 weeks ago
• gosling-lang / gosling.js
  Grammar of Scalable Linked Interactive Nucleotide Graphics
  ☆181Updated 3 weeks ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 4 years ago
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated 9 months ago
• abdenlab / ipylangchat
  Simple Jupyter chat UI for LangChain
  ☆11Updated last year
• mpiersonsmela / SeqVerify
  Analyzes whole genome sequencing data for gene-editing verification
  ☆10Updated 2 months ago
• hubmapconsortium / portal-ui
  HuBMAP Data Portal front end
  ☆13Updated 2 weeks ago
• chrisprice / d3fc-webgl-hathi-explorer
  A T-SNE scatter plot implemented using D3FC's WebGL series
  ☆16Updated 4 years ago
• hms-dbmi / cistrome-explorer
  Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
  ☆13Updated 2 years ago