Alternatives and similar repositories for fasql

Users that are interested in fasql are comparing it to the libraries listed below

• wheretrue / exon-duckdb
  DuckDB Extension for working with bioinformatic data.
  ☆18Updated last year
• wheretrue / exon
  Exon is an OLAP query engine specifically for biology and life science applications.
  ☆70Updated 6 months ago
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated 2 weeks ago
• hms-dbmi / upset-altair-notebook
  Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
  ☆31Updated 3 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated 3 weeks ago
• visdesignlab / upset2
  UpSet - Visualizing Intersecting Sets
  ☆69Updated last week
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆68Updated 2 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated 2 years ago
• depictio / depictio
  Bioinformatics web-platform visualisation dashboard creation
  ☆22Updated this week
• miniwdl-ext / miniwdl-aws
  Extends miniwdl to run workflows on AWS Batch & EFS
  ☆22Updated last year
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• visdesignlab / persist
  Persist is a JupyterLab extension to enable persistent interactive visualizations in JupyterLab notebooks.
  ☆45Updated 5 months ago
• domoritz / mosaic-motherduck
  ☆14Updated last year
• hms-dbmi / cistrome-explorer
  Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
  ☆13Updated last year
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• caporaso-lab / cual-id
  A package for creating and managing sample identifiers in comparative -omics datasets.
  ☆24Updated 8 years ago
• trytoolchest / toolchest-client-python
  Toolchest Python client
  ☆15Updated 2 years ago
• ArpiarSaundersLab / annsql
  The AnnSQL package enables SQL based queries on AnnData objects.
  ☆31Updated last month
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆140Updated last week
• greenelab / hclust
  Agglomerative hierarchical clustering in JavaScript
  ☆19Updated 9 months ago
• manzt / scipy-2024-anywidget
  ☆25Updated last year
• benediktrauscher / msaR
  The BioJS MSA viewer wrapped into an R package
  ☆12Updated 9 years ago
• fastobo / fastobo-py
  Faultless AST for Open Biomedical Ontologies in Python.
  ☆30Updated 4 months ago
• chuntul / d3-upset
  An UpSet plot in d3.js.
  ☆19Updated 5 years ago
• abdenlab / ipylangchat
  Simple Jupyter chat UI for LangChain
  ☆11Updated last year
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• jdrudolph / uniprot
  command-line and python interface to the uniprot database
  ☆10Updated 10 years ago
• wheretrue / biobear
  Work with bioinformatic files using Arrow, Polars, and/or DuckDB
  ☆190Updated 7 months ago
• Mike-Honey / sars-cov-2-genomes
  SARS-CoV-2 genome data analysis
  ☆10Updated 3 weeks ago
• stjude-rust-labs / crankshaft
  A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
  ☆42Updated last week