Alternatives and similar repositories for fasql

Users that are interested in fasql are comparing it to the libraries listed below

• wheretrue / exon-duckdb
  DuckDB Extension for working with bioinformatic data.
  ☆16Updated last year
• wheretrue / exon
  Exon is an OLAP query engine specifically for biology and life science applications.
  ☆64Updated 2 months ago
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated 3 weeks ago
• vsbuffalo / duckdb-vcf-extension
  ☆11Updated 5 months ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated last year
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated 2 months ago
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆81Updated this week
• greenelab / hclust
  Agglomerative hierarchical clustering in JavaScript
  ☆19Updated 6 months ago
• broadinstitute / gene-hints
  Discoverability for gene search
  ☆12Updated 2 years ago
• vinisalazar / BioProv
  A provenance library for bioinformatics workflows 🧬 🔀 📝
  ☆14Updated 3 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆28Updated 3 weeks ago
• monarch-initiative / monarchr
  R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.
  ☆14Updated 2 weeks ago
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 3 years ago
• TileDB-Inc / TileDB-BioImaging
  Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.
  ☆18Updated 2 months ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 10 months ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• opentargets-archive / genetics-app
  Open Targets Genetics UI
  ☆14Updated 4 months ago
• hms-dbmi / upset-altair-notebook
  Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
  ☆31Updated 3 years ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• hubmapconsortium / portal-ui
  HuBMAP Data Portal front end
  ☆13Updated this week
• sparkblastproject / v2
  SparkBLAST is a parallelization of a sequence alignment application (BLAST) that employs cloud computing for the provisioning of computat…
  ☆9Updated 8 years ago
• ArpiarSaundersLab / annsql
  The AnnSQL package enables SQL based queries on AnnData objects.
  ☆20Updated last month
• OBF / FALDO
  Feature Annotation Location Description Ontology
  ☆34Updated 5 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• ababaian / bioFreelancers
  Freelance bioinformaticians directory
  ☆9Updated 2 years ago
• trytoolchest / toolchest-client-python
  Toolchest Python client
  ☆15Updated last year
• benchling / integration-examples
  Example usage of the Benchling API: https://docs.benchling.com/
  ☆33Updated last week
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆16Updated 2 months ago
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆37Updated 3 weeks ago
• manzt / scipy-2024-anywidget
  ☆24Updated 11 months ago