wheretrue / fasqlLinks
DuckDB Extension for reading and writing FASTA and FASTQ Files
☆21Updated 2 years ago
Alternatives and similar repositories for fasql
Users that are interested in fasql are comparing it to the libraries listed below
Sorting:
- DuckDB Extension for working with bioinformatic data.☆17Updated last year
- Exon is an OLAP query engine specifically for biology and life science applications.☆70Updated 5 months ago
- jinja2-enabled jupyter notebooks☆37Updated 2 weeks ago
- SQL support plugin for Nextflow☆32Updated this week
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆31Updated 3 years ago
- Bioinformatics web-platform visualisation dashboard creation☆22Updated this week
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated 2 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Updated last year
- Oxbow makes genomic data ready for high-performance analytics.☆120Updated last week
- Simple Jupyter chat UI for LangChain☆11Updated last year
- UpSet - Visualizing Intersecting Sets☆69Updated this week
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.☆17Updated 5 months ago
- The AnnSQL package enables SQL based queries on AnnData objects.☆29Updated this week
- ☆14Updated last year
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆68Updated 2 years ago
- ☆24Updated last year
- A Python package for creating UpSet plots using Plotly☆28Updated last year
- Agglomerative hierarchical clustering in JavaScript☆19Updated 8 months ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆189Updated 5 months ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆24Updated 8 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated this week
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- A PostgreSQL foreign data wrapper for VCF files.☆18Updated 8 years ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 3 weeks ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆15Updated 4 months ago
- Visualising data frames as funky heatmaps 📊, the Python implementation☆17Updated 6 months ago
- Faultless AST for Open Biomedical Ontologies in Python.☆30Updated 3 months ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Updated last year