wheretrue / fasqlLinks
DuckDB Extension for reading and writing FASTA and FASTQ Files
☆21Updated 2 years ago
Alternatives and similar repositories for fasql
Users that are interested in fasql are comparing it to the libraries listed below
Sorting:
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Updated 10 months ago
- DuckDB Extension for working with bioinformatic data.☆19Updated 2 years ago
- jinja2-enabled jupyter notebooks☆37Updated last week
- SQL support plugin for Nextflow☆32Updated 4 months ago
- Bioinformatics web-platform visualisation dashboard creation☆31Updated this week
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆31Updated 4 years ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆194Updated 10 months ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated 2 years ago
- Simple Jupyter chat UI for LangChain☆11Updated last year
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Updated last year
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Updated last month
- WDL plugin for pytest☆49Updated 2 years ago
- Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.☆18Updated last month
- Agglomerative hierarchical clustering in JavaScript☆19Updated last year
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Updated 3 years ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- ☆26Updated last year
- Toolchest Python client☆15Updated 2 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆15Updated 9 months ago
- UpSet - Visualizing Intersecting Sets☆72Updated last week
- Oxbow makes genomic data ready for high-performance analytics.☆147Updated last month
- The WES API is a standard way to run and manage portable workflows.☆87Updated last month
- The AnnSQL package enables SQL based queries on AnnData objects.☆39Updated 5 months ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Updated 2 years ago
- Grammar of Scalable Linked Interactive Nucleotide Graphics☆181Updated this week
- A PostgreSQL foreign data wrapper for VCF files.☆18Updated 8 years ago
- Genomics Extension for SQLite☆168Updated last year
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 6 months ago
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated 2 weeks ago
- HuBMAP Data Portal front end☆13Updated this week