UFISH-Team / U-FISHLinks
Deep learning based spot detection for FISH images.
☆26Updated 3 months ago
Alternatives and similar repositories for U-FISH
Users that are interested in U-FISH are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- ☆27Updated last year
- Interactive visualization of spatial omics data☆73Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated last week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Updated 2 years ago
- Toolbox for the analysis of smFISH images.☆70Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last week
- Integrated pipeline for multiplexed image analysis☆100Updated 8 months ago
- Spatial Single-Cell Analysis Toolkit☆105Updated 5 months ago
- Python API and Jupyter widget for Vitessce☆59Updated last month
- ☆29Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 6 months ago
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Histology Topography Cytometry Analysis Toolbox☆69Updated last month
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- ☆83Updated last week
- A plugin to visualise 3D spatial single cell omics☆20Updated last month
- comseg☆24Updated 10 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated last week
- ☆36Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆16Updated 5 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago