UFISH-Team / U-FISHView external linksLinks
Deep learning based spot detection for FISH images.
☆31Jan 7, 2026Updated last month
Alternatives and similar repositories for U-FISH
Users that are interested in U-FISH are comparing it to the libraries listed below
Sorting:
- Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).☆17Dec 16, 2024Updated last year
- comseg☆24Feb 6, 2025Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Oct 22, 2025Updated 3 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Block-wise operations for large nD volumes☆43Feb 4, 2026Updated last week
- Toolbox for the analysis of smFISH images.☆73Oct 31, 2023Updated 2 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 4 months ago
- Raw format to OME-TIFF converter☆56Jan 21, 2026Updated 3 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Dec 2, 2025Updated 2 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Nov 6, 2025Updated 3 months ago
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- Automated Cell Toolkit☆24Oct 15, 2025Updated 4 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- Python library for reading tiles from wsi tiff-files.☆16Dec 9, 2025Updated 2 months ago
- Analyzing cellular niches in spatial transcriptomics data☆34Nov 18, 2024Updated last year
- ☆14Jan 7, 2026Updated last month
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- ☆29Apr 26, 2024Updated last year
- ☆27Oct 12, 2024Updated last year
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 2 years ago
- rna2seg☆17May 15, 2025Updated 9 months ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- ☆14May 17, 2024Updated last year
- ☆13Dec 7, 2021Updated 4 years ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆26Jan 27, 2026Updated 2 weeks ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆239Jan 9, 2026Updated last month
- ☆36Mar 22, 2024Updated last year
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Nov 10, 2025Updated 3 months ago
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 4, 2026Updated last week
- ☆17Jul 8, 2024Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Feb 2, 2026Updated last week
- A scalable machine learning pipeline for probe specificity prediction.☆14Jan 23, 2024Updated 2 years ago
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated last year
- ☆88Updated this week
- Interactive visualization of spatial omics data☆75Updated this week
- ☆72Feb 14, 2025Updated last year
- Django-based OMERO.web client☆23Updated this week
- Experimental micro-service for implementing the Zarr spec over HTTP☆20Jan 19, 2026Updated 3 weeks ago