☆27Oct 12, 2024Updated last year
Alternatives and similar repositories for ssam
Users that are interested in ssam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Jun 24, 2026Updated 3 months ago
- ☆31Apr 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆47Jul 24, 2025Updated last year
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 6 months ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Updated this week
- ☆17Updated this week
- ☆30Oct 4, 2024Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆23Jan 5, 2023Updated 3 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆215Jul 31, 2026Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Sep 2, 2026Updated 3 weeks ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆15Mar 12, 2026Updated 6 months ago
- ☆74May 28, 2025Updated last year
- ☆40May 10, 2026Updated 4 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 7 months ago
- Segmentation-free Analysis of In Situ Capture data☆15Jul 6, 2026Updated 2 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Sep 1, 2026Updated 3 weeks ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 5 years ago
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 5 months ago
- ☆13Feb 27, 2024Updated 2 years ago
- Segmentation error aware clustering for multiplexed imaging☆19Jan 9, 2025Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Spatial and multiomic visualization and analysis library☆60Updated this week
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- ☆38Sep 15, 2026Updated last week
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆38Dec 13, 2023Updated 2 years ago
- Genomics Visualization Retrieval for Authoring with Multimodality☆18Jun 19, 2026Updated 3 months ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated 2 months ago
- CAST package☆43Oct 26, 2024Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 5 months ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago