Alternatives and similar repositories for ssam

Users that are interested in ssam are comparing it to the libraries listed below

• scverse / spatialdata-io
  ☆88Updated last week
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆108Updated last month
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆51Updated last week
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆35Updated last year
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆86Updated 2 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆95Updated 2 years ago
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆84Updated 3 weeks ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆19Updated last year
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated 8 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 7 months ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆105Updated this week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• scverse / spatialdata-notebooks
  ☆65Updated last week
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated last year
• seqscope / ficture
  ☆44Updated 3 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆33Updated last week
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆39Updated last year
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆73Updated 2 weeks ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆61Updated last week
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆25Updated 3 months ago
• SpatialPathology / InSituPy
  ☆28Updated this week
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆75Updated last week
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆39Updated 4 months ago
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆34Updated 8 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆48Updated 3 months ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆66Updated 7 months ago
• BodenmillerGroup / cytomapper
  R package for visualization of highly multiplexed imaging data
  ☆34Updated 8 months ago
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆67Updated 3 weeks ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆39Updated this week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year