beliveau-lab / OligoMinerView external linksLinks
Genome-scale design tool for oligo hybridization probes
☆71May 19, 2021Updated 4 years ago
Alternatives and similar repositories for OligoMiner
Users that are interested in OligoMiner are comparing it to the libraries listed below
Sorting:
- A scalable machine learning pipeline for probe specificity prediction.☆14Jan 23, 2024Updated 2 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 3 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Feb 4, 2025Updated last year
- Data Standards Hackathon for NGS based typing.☆14Feb 2, 2026Updated 2 weeks ago
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆24Jan 20, 2026Updated 3 weeks ago
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆15Jul 11, 2024Updated last year
- R package for CRAG☆12Feb 17, 2025Updated 11 months ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- Terminal-based multiple sequence alignment (MSA) viewer designed for remote and HPC bioinformatics workflows.☆26Feb 3, 2026Updated 2 weeks ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- Normalizing Hi-C contact counts efficiently☆40May 21, 2025Updated 8 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Source codes and example scripts for chromatin tracing projects in Zhuang lab☆28Jan 27, 2022Updated 4 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 2 years ago
- Quick preview of HDF5 files on the command line☆13Oct 5, 2018Updated 7 years ago
- CircSplice☆12Feb 27, 2019Updated 6 years ago
- Analysis of antibody NGS data☆13May 17, 2022Updated 3 years ago
- ☆29Apr 26, 2024Updated last year
- Legend made easy for matplotlib☆33Jun 7, 2025Updated 8 months ago
- ☆13Sep 4, 2025Updated 5 months ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆15Jul 26, 2017Updated 8 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 5 months ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- ☆53Apr 1, 2021Updated 4 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.☆17Sep 13, 2021Updated 4 years ago
- BioLearns: Computational Biology and Bioinformatics Toolbox in Python☆12Oct 12, 2022Updated 3 years ago
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆18Nov 5, 2025Updated 3 months ago
- ☆63Mar 18, 2025Updated 10 months ago
- The SnoVault general purpose hybrid object-relational database☆16Mar 7, 2024Updated last year
- Toolbox for the analysis of smFISH images.☆73Oct 31, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆14Nov 22, 2022Updated 3 years ago
- Open Human Genome Library☆60Dec 22, 2025Updated last month
- Empirical Bayes methods for single cell data☆16Oct 12, 2020Updated 5 years ago