Alternatives and similar repositories for OligoMiner

Users that are interested in OligoMiner are comparing it to the libraries listed below

• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆53Updated 3 years ago
• rajewsky-lab / find_circ2
  Find circRNAs in RNA-seq data.
  ☆14Updated 8 years ago
• indrops / indrops
  Pipeline for processing inDrops sequencing data
  ☆76Updated 6 years ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆113Updated 3 years ago
• fengzhanglab / Screening_Protocols_manuscript
  Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
  ☆50Updated 7 years ago
• rajewsky-lab / spacemake
  ☆44Updated last week
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆44Updated 4 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 4 months ago
• icbi-lab / nextNEOpi
  nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
  ☆73Updated 3 weeks ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆44Updated 3 months ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 7 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆36Updated last year
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆73Updated 11 months ago
• GuttmanLab / sprite-pipeline
  A self-contained repository of all code needed for SPRITE analysis
  ☆21Updated 3 years ago
• yanailab / CEL-Seq-pipeline
  ☆33Updated 6 years ago
• koszullab / E_coli_analysis
  Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…
  ☆11Updated 4 years ago
• xryanglab / xtail
  Genome-wide assessment of differential translations with ribosome profiling data
  ☆19Updated last month
• sbooeshaghi / single-cell-vocabulary
  ☆26Updated last year
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆31Updated 3 years ago
• Chrom3D / Chrom3D
  ☆49Updated 2 years ago
• hms-dbmi / 3d-genome-processing-tutorial
  A 3D genome data processing tutorial for ISMB/ECCB 2017
  ☆50Updated 7 years ago
• YangLab / CIRCexplorer
  A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …
  ☆61Updated 6 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated 2 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆46Updated 2 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆66Updated 5 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated last year
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆69Updated last year
• mhorlbeck / ScreenProcessing
  ☆64Updated last year