beliveau-lab / OligoMiner
Genome-scale design tool for oligo hybridization probes
☆58Updated 3 years ago
Alternatives and similar repositories for OligoMiner:
Users that are interested in OligoMiner are comparing it to the libraries listed below
- Publication quality NGS track plotting☆111Updated 2 years ago
- Find circRNAs in RNA-seq data.☆14Updated 8 years ago
- ☆67Updated 6 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆69Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening☆46Updated 7 years ago
- Pipeline for processing inDrops sequencing data☆75Updated 6 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆106Updated 7 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆60Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆48Updated last week
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆67Updated this week
- ☆35Updated 6 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆51Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- machine-readable file format for genomic library sequence and structure☆118Updated last week
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 3 years ago
- A Python-based EGA download client☆97Updated 5 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆108Updated last month
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆57Updated 4 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆82Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Updated 4 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- ☆66Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆67Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆33Updated 5 years ago