Genome-scale design tool for oligo hybridization probes
☆71May 19, 2021Updated 4 years ago
Alternatives and similar repositories for OligoMiner
Users that are interested in OligoMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable machine learning pipeline for probe specificity prediction.☆14Mar 26, 2026Updated 3 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆52Feb 4, 2025Updated last year
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆15Jul 11, 2024Updated last year
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆24Feb 28, 2026Updated last month
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Source codes and example scripts for chromatin tracing projects in Zhuang lab☆29Jan 27, 2022Updated 4 years ago
- Terminal-based multiple sequence alignment (MSA) viewer designed for remote and HPC bioinformatics workflows.☆29Feb 3, 2026Updated 2 months ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- BioLearns: Computational Biology and Bioinformatics Toolbox in Python☆12Oct 12, 2022Updated 3 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- ☆65Mar 18, 2025Updated last year
- Spotiflow plugin for napari☆16Feb 2, 2026Updated 2 months ago
- Toolbox for the analysis of smFISH images.☆74Oct 31, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last month
- Empirical Bayes methods for single cell data☆17Oct 12, 2020Updated 5 years ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Generating interfaces(CLI, Qt GUI, Dash web app) from a Python function or a command program.☆41Apr 1, 2023Updated 3 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆22Jun 19, 2023Updated 2 years ago
- Hi-C data processing pipeline☆38Feb 27, 2024Updated 2 years ago
- A fast multi-threaded k-mer counter☆535Mar 20, 2024Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 3 months ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Jan 29, 2015Updated 11 years ago
- Normalizing Hi-C contact counts efficiently☆44May 21, 2025Updated 10 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis of antibody NGS data☆13Mar 19, 2026Updated 3 weeks ago
- ☆29Apr 26, 2024Updated last year
- Data Standards Hackathon for NGS based typing.☆14Feb 2, 2026Updated 2 months ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- ☆13Sep 4, 2025Updated 7 months ago
- ☆13Jan 2, 2024Updated 2 years ago
- A python package for showing JBrowse views☆27Jan 3, 2024Updated 2 years ago