Generating interfaces(CLI, Qt GUI, Dash web app) from a Python function or a command program.
☆41Apr 1, 2023Updated 2 years ago
Alternatives and similar repositories for oneFace
Users that are interested in oneFace are comparing it to the libraries listed below
Sorting:
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Genome-wide contact analysis using sklearn☆74Mar 23, 2024Updated last year
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- A scalable machine learning pipeline for probe specificity prediction.☆14Jan 23, 2024Updated 2 years ago
- Quick preview of HDF5 files on the command line☆13Oct 5, 2018Updated 7 years ago
- Pipeline for designing custom probes against human genes☆22Jan 30, 2026Updated last month
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆89Mar 10, 2026Updated last week
- ☆29Apr 26, 2024Updated last year
- A web-based, time-series visualizer for tracked segmented data.☆14Mar 13, 2026Updated last week
- Dataflow based workflow framework☆41May 15, 2021Updated 4 years ago
- Spatial analysis of FISH data☆33May 20, 2025Updated 10 months ago
- Genome browser hub for the T2T genomes and resources☆27Mar 11, 2026Updated last week
- Unified API for working with multiple dataclass-like libraries☆19Mar 2, 2026Updated 2 weeks ago
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆21Jun 19, 2023Updated 2 years ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated 2 months ago
- DeepCell Kiosk Distribution for Kubernetes on GKE and AWS☆37Jul 12, 2023Updated 2 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 4 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Dec 11, 2023Updated 2 years ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- a computational tool for analyzing single cell Hi-C data☆25Apr 23, 2024Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).☆17Dec 16, 2024Updated last year
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Nov 10, 2025Updated 4 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).☆24Feb 28, 2026Updated 3 weeks ago
- Import Trackmate XML files in Python as Pandas dataframe☆12Mar 1, 2025Updated last year
- Pyfilesystem2 implementation for OneDrive☆10Mar 8, 2026Updated last week
- a software library containing FFT functions written in OpenCL☆12Dec 12, 2024Updated last year
- install libraries required to use qt on github action (does not install qt itself)☆18Oct 11, 2024Updated last year
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- ☆37Mar 22, 2024Updated last year
- A napari plugin for zarr backed OME-NGFF images☆45Updated this week