JinLabBioinfo / HiCorrLinks
HiCorr: a Hi-C data bias-correction pipeline
☆28Updated 2 months ago
Alternatives and similar repositories for HiCorr
Users that are interested in HiCorr are comparing it to the libraries listed below
Sorting:
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 2 months ago
- Genome-wide contact analysis using sklearn☆65Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- ☆24Updated 4 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆67Updated 6 months ago
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 10 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 7 months ago
- IDR☆31Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 4 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆22Updated last month
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago