Building Gene Sets and Mapping mFISH Data
☆16Aug 20, 2025Updated 8 months ago
Alternatives and similar repositories for mfishtools
Users that are interested in mfishtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 8 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated 2 weeks ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆40Apr 7, 2026Updated 3 weeks ago
- iterative clustering pipeline of big single cell datasets.☆39Sep 5, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12May 29, 2024Updated last year
- Sync changes in Paperpile to a Notion database.☆14Aug 30, 2022Updated 3 years ago
- ☆45Jun 27, 2023Updated 2 years ago
- ☆49Mar 1, 2018Updated 8 years ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated 8 months ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 8 years ago
- ☆29Apr 26, 2024Updated 2 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Feature Ranking in (possibly large) Clustered Single Cell Data☆41Apr 15, 2021Updated 5 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Aug 1, 2021Updated 4 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 5 months ago
- Supplementary files and notebooks to recreate figures.☆21Aug 12, 2025Updated 8 months ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 4 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 7 months ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for distributed alignment of massive images☆95Apr 22, 2026Updated last week
- Tool for precise, interactive, fast and scalable FISH spot detection☆52Feb 4, 2025Updated last year
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆20Dec 5, 2024Updated last year
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 8 months ago
- ImageJ convenience layer for N5☆19Apr 15, 2026Updated 2 weeks ago
- Generate HCR-style Probe Pairs for mRNA visualization☆46Sep 19, 2023Updated 2 years ago
- ☆15Dec 19, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆25Jun 14, 2024Updated last year
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Mar 26, 2026Updated last month
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆14Dec 27, 2023Updated 2 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 4 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 6 years ago