AllenInstitute / mfishtools
Building Gene Sets and Mapping mFISH Data
☆16Updated last year
Alternatives and similar repositories for mfishtools
Users that are interested in mfishtools are comparing it to the libraries listed below
Sorting:
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- ☆28Updated 3 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 4 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- ☆12Updated 11 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆36Updated 3 weeks ago
- R API and htmlwidget for Vitessce☆40Updated 7 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆10Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated last month
- ☆26Updated 7 months ago
- ☆35Updated last year
- iterative clustering pipeline of big single cell datasets.☆31Updated 2 weeks ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- Identification of spatial homogeneous regions☆20Updated 4 months ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 6 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Code used for muti cellular factor analysis☆13Updated last year
- CAST package☆35Updated 6 months ago
- ☆62Updated this week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆11Updated 2 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- A repository for benchmarking spatial deconvolution and mapping tools