Building Gene Sets and Mapping mFISH Data
☆16Aug 20, 2025Updated last year
Alternatives and similar repositories for mfishtools
Users that are interested in mfishtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools and scripts for EASI-FISH image data analysis☆17Jul 24, 2026Updated 3 months ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆123Aug 20, 2025Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated 6 months ago
- ☆31Apr 26, 2024Updated 2 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆43Apr 7, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13May 29, 2024Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆41Sep 5, 2025Updated last year
- A scalable machine learning pipeline for probe specificity prediction.☆14Aug 14, 2026Updated 2 months ago
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆53Aug 1, 2021Updated 5 years ago
- Sync changes in Paperpile to a Notion database.☆14Aug 30, 2022Updated 4 years ago
- Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" …☆11Oct 17, 2024Updated 2 years ago
- ☆48Jun 27, 2023Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MERFISH decoding software☆30Aug 16, 2025Updated last year
- Tools for distributed alignment of massive images☆95Oct 22, 2026Updated last week
- ☆50Mar 1, 2018Updated 8 years ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 6 years ago
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated last year
- Single Cell Cluster Evaluation☆102Jul 28, 2021Updated 5 years ago
- The Open Pediatric Cancer Project, maintained at Children's National☆15Updated this week
- ☆13Feb 27, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 9 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆42Apr 15, 2021Updated 5 years ago
- ☆19Jun 15, 2023Updated 3 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆15Jun 12, 2025Updated last year
- ☆53Apr 1, 2021Updated 5 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 11 months ago
- Deep Learning Library for Spot Detection☆24Jun 4, 2026Updated 4 months ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆28Oct 12, 2024Updated 2 years ago
- HCR probe designer with Shiny graphical user interface☆13Aug 7, 2025Updated last year
- Run Length Encoded vectors for julia, inspired by BioConductor.☆19Jan 13, 2024Updated 2 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity (now archived). Pl…☆20May 13, 2026Updated 5 months ago
- Supplementary files and notebooks to recreate figures.☆24Aug 4, 2026Updated 2 months ago
- Generate HCR-style Probe Pairs for mRNA visualization☆49Sep 19, 2023Updated 3 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 3 years ago