AllenInstitute / mfishtoolsLinks
Building Gene Sets and Mapping mFISH Data
☆16Updated 3 months ago
Alternatives and similar repositories for mfishtools
Users that are interested in mfishtools are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 2 months ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 5 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- ☆30Updated last year
- ☆30Updated 3 years ago
- R API and htmlwidget for Vitessce☆44Updated 3 months ago
- ☆71Updated 6 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 2 months ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Updated last year
- Hierarchical classification of cells☆28Updated last year
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- ☆48Updated 7 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 weeks ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 4 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 5 years ago
- Extension of SpatialExperiment with sf☆56Updated this week
- Code used for muti cellular factor analysis☆14Updated last year
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated last year
- Identification of spatial homogeneous regions☆21Updated 2 months ago