Alternatives and similar repositories for DLO-HiC-Tools:

Users that are interested in DLO-HiC-Tools are comparing it to the libraries listed below

• ay-lab / selfish
  SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
  ☆17Updated last year
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆38Updated 3 years ago
• ysora / stripenn
  Architectural stripe detection from 3D genome conformation data
  ☆17Updated last year
• TaoYang-dev / hicrep
  R package to evaluate the reproducibility of Hi-C data
  ☆26Updated last year
• tjs23 / nuc_dynamics
  Particle dynamics and simulated annealing for chromosome structure calculation
  ☆29Updated last year
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆41Updated 2 years ago
• keleslab / FreeHiC
  FreeHi-C pipeline for high fidelity Hi-C data simulation.
  ☆11Updated 3 years ago
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆20Updated 3 years ago
• scoutzxb / CscoreTool
  ☆20Updated 4 years ago
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆17Updated 2 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆30Updated last week
• JRowleyLab / HiCrayon
  Web-Application for the cross-visualization of HiC and ChIP-seq data.
  ☆16Updated 5 months ago
• XiaoTaoWang / Best-Labs-of-3D-Genome
  Data and the co-authored network I extracted for lab selection in 3D genome research field
  ☆14Updated 3 years ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆38Updated last year
• CSOgroup / CALDER
  ☆21Updated last year
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆42Updated last year
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆19Updated 4 months ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆26Updated 3 years ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 9 months ago
• 10XGenomics / cellranger-atac
  ☆18Updated 4 years ago
• wangjr03 / FLAMINGO
  ☆16Updated 11 months ago
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 3 years ago
• Xieeeee / Droplet-Hi-C
  🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
  ☆12Updated last week
• 4dn-dcic / pairsqc
  QC report generator for Hi-C pairs file
  ☆11Updated 4 years ago
• Roy-lab / grinch
  GRiNCH: Graph-Regularized NMF and Clustering for Hi-C
  ☆9Updated last year
• mirnylab / hiclib-legacy
  A legacy repository. Was replaced by distiller, cooler, and cooltools.
  ☆18Updated 5 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 6 months ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 2 years ago
• Zhong-Lab-UCSD / HiCtool
  Python library for processing and visualizing Hi-C data
  ☆20Updated 4 years ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year