GangCaoLab / DLO-HiC-ToolsLinks
Tools for DLO HiC data analyze
☆16Updated 3 years ago
Alternatives and similar repositories for DLO-HiC-Tools
Users that are interested in DLO-HiC-Tools are comparing it to the libraries listed below
Sorting:
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- ☆22Updated 5 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 2 months ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated last year
- ☆10Updated 5 years ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Updated 3 years ago
- ☆19Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- ☆22Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆39Updated last year
- SIP: Significant Interaction Peak caller☆15Updated 7 months ago
- ☆22Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 3 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆49Updated 6 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Comprehensive analysis of small RNA sequencing data☆34Updated 6 months ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Genome-wide contact analysis using sklearn☆71Updated last year
- Statistically Significant loops from HiChIP data☆46Updated last year
- Tutorial Website☆60Updated 4 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated last week
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Updated 4 years ago
- ☆17Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- The analysis pipeline for FLEP-seq☆15Updated 2 years ago