GangCaoLab / DLO-HiC-ToolsLinks
Tools for DLO HiC data analyze
☆16Updated 2 years ago
Alternatives and similar repositories for DLO-HiC-Tools
Users that are interested in DLO-HiC-Tools are comparing it to the libraries listed below
Sorting:
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆13Updated last month
- ☆21Updated 4 years ago
- A toolkit for analyzing architectural stripes☆19Updated 6 months ago
- ☆19Updated 4 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- SIP: Significant Interaction Peak caller☆14Updated last month
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆15Updated 3 years ago
- ☆22Updated last year
- R package to evaluate reproducibility of Hi-C data☆10Updated 2 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated last week
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- ☆17Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆29Updated last week
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Statistically Significant loops from HiChIP data☆43Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 2 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- ☆49Updated 10 months ago
- ☆20Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 7 months ago