Tools for DLO HiC data analyze
☆16Oct 31, 2022Updated 4 years ago
Alternatives and similar repositories for DLO-HiC-Tools
Users that are interested in DLO-HiC-Tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R for data science in Chinese.☆10Aug 31, 2024Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- Effortless, flexible, and powerful job execution engine.☆10Jul 24, 2025Updated last year
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 8 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆31Mar 15, 2024Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- Generating interfaces(CLI, Qt GUI, Dash web app) from a Python function or a command program.☆40Apr 1, 2023Updated 3 years ago
- Legend made easy for matplotlib☆36Aug 27, 2026Updated 2 months ago
- Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis☆10Jan 6, 2020Updated 6 years ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 5 months ago
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Aug 19, 2020Updated 6 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆42Sep 14, 2026Updated last month
- ☆23Aug 11, 2020Updated 6 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 3 months ago
- ☆11Aug 30, 2021Updated 5 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 8 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Jun 27, 2025Updated last year
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆11Aug 28, 2026Updated 2 months ago
- ☆12Jan 18, 2023Updated 3 years ago
- An integrated package to process diploid Hi-C data☆18Dec 9, 2021Updated 4 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆23Sep 12, 2023Updated 3 years ago
- SIP: Significant Interaction Peak caller☆17Apr 24, 2025Updated last year
- cell type specific, trait-associated gene regulation☆31Sep 8, 2026Updated last month
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆138Jul 29, 2026Updated 3 months ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 5 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 5 years ago
- 3D genome reconstruction with Lorentzian objective function☆10Nov 16, 2019Updated 6 years ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 5 years ago
- Tigerfish☆13Jan 30, 2024Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆79Jun 24, 2026Updated 4 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆68Jun 7, 2019Updated 7 years ago