GangCaoLab / DLO-HiC-ToolsLinks
Tools for DLO HiC data analyze
☆16Updated 3 years ago
Alternatives and similar repositories for DLO-HiC-Tools
Users that are interested in DLO-HiC-Tools are comparing it to the libraries listed below
Sorting:
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 3 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated 2 weeks ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Updated 4 years ago
- ☆22Updated 5 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Updated 4 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 4 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 3 years ago
- Genome-wide contact analysis using sklearn☆72Updated last year
- ☆22Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆42Updated this week
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆29Updated 9 months ago
- Tutorial Website☆61Updated 4 years ago
- ☆19Updated 4 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- ☆10Updated 5 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- isoCirc☆10Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 9 months ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆30Updated last year
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago