Alternatives and similar repositories for looper:

Users that are interested in looper are comparing it to the libraries listed below

• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆25Updated this week
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆24Updated 4 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 7 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆43Updated 2 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated this week
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆18Updated this week
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆26Updated last week
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated last month
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆17Updated last year
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 6 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 7 months ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆40Updated 4 years ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆18Updated last month
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆20Updated this week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆35Updated 3 weeks ago
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated 5 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆50Updated 3 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 6 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 5 months ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆27Updated 9 months ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated this week
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆34Updated 7 years ago