pepkit / looper
A job submitter for Portable Encapsulated Projects
☆22Updated last month
Alternatives and similar repositories for looper:
Users that are interested in looper are comparing it to the libraries listed below
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Fast sequencing data quality metrics☆26Updated last week
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Bedfile perturbation tool☆17Updated last year
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- ☆22Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated this week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Location of public benchmarking; primarily final results☆18Updated last month
- Sample Contamination Estimate from VCF☆19Updated 5 months ago
- Calculate and plot distributions of genomic ranges☆26Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- Model files for Sentieon variant callers☆14Updated this week
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 8 months ago
- a minimal, scriptable genome browser for python☆50Updated 3 months ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 3 weeks ago
- Removing PCR duplicates for sequencing reads.☆14Updated 4 years ago
- bedtools-like functionality for interval sets in rust☆51Updated 7 months ago