PreibischLab / RS-FISHLinks
Tool for precise, interactive, fast and scalable FISH spot detection
☆50Updated 9 months ago
Alternatives and similar repositories for RS-FISH
Users that are interested in RS-FISH are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 5 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Toolbox for the analysis of smFISH images.☆68Updated 2 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 2 weeks ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆21Updated 3 weeks ago
- The 2025 version of cellPLATO☆15Updated last month
- Interactive visualization and sharing of cell tracking data in the browser☆40Updated 3 weeks ago
- Interactive visualization of spatial omics data☆72Updated last week
- Deconvolution of widefield microscopy images and generation of point spread functions☆55Updated last week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 3 years ago
- Accurate and efficient spot detection for microscopy data☆108Updated last month
- Deep learning based spot detection for FISH images.☆25Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆34Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Raw format to OME-TIFF converter☆56Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆57Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆100Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆65Updated 6 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago