Tool for precise, interactive, fast and scalable FISH spot detection
☆53Feb 4, 2025Updated last year
Alternatives and similar repositories for RS-FISH
Users that are interested in RS-FISH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated 3 months ago
- Toolbox for the analysis of smFISH images.☆78Oct 31, 2023Updated 2 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆13Feb 27, 2024Updated 2 years ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- ☆27Oct 12, 2024Updated last year
- An open-source ecosystem of hardware and software for head-fixed behavior☆14Sep 25, 2025Updated 9 months ago
- Spatial analysis of FISH data☆33Jun 5, 2026Updated last month
- browsing large volumetric data and shapes☆21Jul 10, 2026Updated last week
- Accurate and efficient spot detection for microscopy data☆137Jun 8, 2026Updated last month
- Genome-scale design tool for oligo hybridization probes☆72May 19, 2021Updated 5 years ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- Tools for distributed alignment of massive images☆95Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆29Apr 26, 2024Updated 2 years ago
- ☆53Apr 1, 2021Updated 5 years ago
- MERFISH decoding software☆27Aug 16, 2025Updated 11 months ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆50Apr 9, 2026Updated 3 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 7 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆36Sep 21, 2021Updated 4 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 11 months ago
- Deep learning based spot detection for FISH images.☆34Jan 7, 2026Updated 6 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆61Apr 24, 2026Updated 2 months ago
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆33Jul 7, 2026Updated last week
- The ImageJ native launcher☆24Oct 11, 2024Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Apr 20, 2026Updated 3 months ago
- Janelia Workstation☆28Jun 30, 2026Updated 2 weeks ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Apr 15, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- Pure Python library for reading NIS Elements ND2 images and metadata☆49Jan 15, 2025Updated last year
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 26, 2026Updated last month
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆51Aug 1, 2021Updated 4 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated last year
- Friendly base POM for all SciJava-based software☆28Updated this week
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆20Jun 16, 2025Updated last year