jni / h5cat
Quick preview of HDF5 files on the command line
☆13Updated 6 years ago
Alternatives and similar repositories for h5cat:
Users that are interested in h5cat are comparing it to the libraries listed below
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆16Updated last year
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Updated 5 years ago
- Python Optimal Leaf Ordering for Hierarchical Clustering☆21Updated 7 years ago
- ☆18Updated 7 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- A library to simulate single-cell data☆2Updated last year
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 5 years ago
- Bam to Pandas DataFrame, quickly☆13Updated 4 months ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 5 months ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 5 months ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 3 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 4 years ago
- ☆36Updated 7 years ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 3 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 5 years ago
- DEPRECATED: Store and query public TCGA data☆11Updated 8 years ago
- Fit generalized linear models in python.☆27Updated last year
- PHi-C: deciphering Hi-C data into polymer dynamics☆8Updated 4 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆16Updated 6 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆54Updated this week
- Create cwl workflows by writing a simple Python script☆40Updated 4 years ago
- Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark☆13Updated 5 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 4 years ago