jni / h5catLinks
Quick preview of HDF5 files on the command line
☆13Updated 6 years ago
Alternatives and similar repositories for h5cat
Users that are interested in h5cat are comparing it to the libraries listed below
Sorting:
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 4 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Updated 6 years ago
- Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark☆14Updated 6 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 5 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- PHi-C: deciphering Hi-C data into polymer dynamics☆8Updated 4 years ago
- ☆11Updated 8 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Updated 4 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆17Updated 11 years ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 7 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- ☆36Updated 7 years ago
- DEPRECATED: Store and query public TCGA data☆11Updated 8 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- ☆12Updated 2 months ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- Galaxy tools for image analysis☆18Updated 3 weeks ago
- Spatial Transcriptomics Dashboard☆27Updated last year
- Slides and demos from our SciPyConf 2019 talk☆13Updated 3 years ago
- ☆12Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated last month
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 10 months ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago