jni / h5cat
Quick preview of HDF5 files on the command line
☆13Updated 6 years ago
Alternatives and similar repositories for h5cat:
Users that are interested in h5cat are comparing it to the libraries listed below
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated last year
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 5 years ago
- Spatial Transcriptomics Dashboard☆28Updated last year
- ☆16Updated 10 months ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Universal RObust Peak Annotator☆15Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆9Updated 3 years ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- DEPRECATED: Store and query public TCGA data☆11Updated 8 years ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- This BLENDER has been sunsetted☆16Updated 7 months ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark☆14Updated 6 years ago
- ☆18Updated 8 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 8 months ago
- ☆15Updated 7 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- ☆12Updated 6 years ago
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆13Updated 3 years ago
- Parsing MHC nomenclature in the wild☆16Updated last month
- ☆36Updated 7 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- A toolkit to quantify cell dynamics in living tissues☆11Updated 6 years ago
- ☆12Updated last year