Alternatives and similar repositories for sam2pairwise

Users that are interested in sam2pairwise are comparing it to the libraries listed below

• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆78Updated 4 months ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆85Updated 6 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 7 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 2 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 3 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 11 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 9 months ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆150Updated 3 weeks ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆106Updated 5 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆76Updated this week
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆61Updated 9 months ago
• epi2me-labs / wf-basecalling
  ☆42Updated 3 weeks ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆99Updated 6 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 3 months ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆38Updated last year
• CshlSiepelLab / phast
  PHAST
  ☆73Updated 3 weeks ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆98Updated 3 months ago
• parklab / bamsnap
  ☆123Updated 8 months ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated 4 months ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆140Updated last month
• epi2me-labs / modbam2bed
  ☆48Updated 10 months ago