dgoodwin208 / ExSeqProcessingLinks
☆12Updated last year
Alternatives and similar repositories for ExSeqProcessing
Users that are interested in ExSeqProcessing are comparing it to the libraries listed below
Sorting:
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated 3 months ago
- Algorithmic and Utility Extensions for the Imaris Program☆18Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Analysis of smFISH data☆11Updated 7 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 10 years ago
- A plugin to visualise 3D spatial single cell omics☆21Updated 3 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆29Updated last year
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated 3 weeks ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆17Updated 4 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 4 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 weeks ago
- MERFISH decoding software☆26Updated last month
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Updated 6 months ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- QuPath extension to interactively align images☆25Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆56Updated this week
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- Building Gene Sets and Mapping mFISH Data☆16Updated last month
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- Image registration (alignment) software for large microscopy images☆25Updated last year
- ☆27Updated 11 months ago