freeman-lab / spark-janeliaLinks
scripts for using spark on janelia's cluster
☆13Updated last year
Alternatives and similar repositories for spark-janelia
Users that are interested in spark-janelia are comparing it to the libraries listed below
Sorting:
- Tool to encode/decode .ipynb into .py files.☆17Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆30Updated 3 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated last year
- code for storing neurodata images and image annotations☆38Updated 7 years ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- ☆14Updated this week
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated last week
- Legacy project superseded by https://github.com/morphonets/SNT☆12Updated 3 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆27Updated 6 years ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated last month
- ☆12Updated 4 years ago
- A stable diffusion demo for napari☆11Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- A fully scalable robust image feature extraction library.☆24Updated 3 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 10 months ago
- python tools for BigDataViewer☆22Updated 6 months ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Updated 3 years ago
- A python script editor plugin for napari☆11Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆83Updated last week
- ☆36Updated 3 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- A 3D interactivity toolbox for napari☆35Updated last week
- ☆20Updated 3 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- Python SDK for interacting with the BossDB REST API☆22Updated 2 months ago
- A python library for advanced lattice light-sheet image analysis☆21Updated 4 years ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago