freeman-lab / spark-janeliaLinks
scripts for using spark on janelia's cluster
☆13Updated 2 years ago
Alternatives and similar repositories for spark-janelia
Users that are interested in spark-janelia are comparing it to the libraries listed below
Sorting:
- code for storing neurodata images and image annotations☆37Updated 8 years ago
- Block-wise task scheduling for large nD volumes.☆33Updated 10 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 4 years ago
- Python SDK for interacting with the BossDB REST API☆22Updated 9 months ago
- A 3D interactivity toolbox for napari☆37Updated 6 months ago
- The RPC library used in ImJoy.☆25Updated last year
- Create web-based OME-Zarr galleries☆22Updated 2 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆20Updated last week
- ☆14Updated this week
- Tool to encode/decode .ipynb into .py files.☆17Updated this week
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Updated 3 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Updated 7 years ago
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆13Updated 2 years ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- website for the napari image viewer☆47Updated this week
- A fully scalable robust image feature extraction library.☆28Updated this week
- Connecting Java/ImgLib2 + Python/NumPy☆31Updated 6 months ago
- Distributed image processing☆225Updated last month
- python tools for BigDataViewer☆22Updated last year
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- General-purpouse camera capture plugin for data streaming to napari☆26Updated last year
- A JupyterBook site for napari workshop materials☆10Updated 3 years ago
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆15Updated 2 years ago
- A python script editor plugin for napari☆11Updated 2 years ago
- napari widgets for start-to-finish batch processing☆15Updated last month
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated 2 months ago
- ☆15Updated 3 years ago
- ☆41Updated this week
- 1d plotting in napari-based canvas.☆25Updated this week