zhangtaolab / Chorus2Links
A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).
☆24Updated 3 weeks ago
Alternatives and similar repositories for Chorus2
Users that are interested in Chorus2 are comparing it to the libraries listed below
Sorting:
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last month
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆63Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆54Updated 8 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆73Updated 2 years ago
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- ☆34Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆117Updated 4 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆116Updated this week
- tutorial on pggb☆36Updated 9 months ago
- Pore-C support☆53Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆90Updated 3 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 3 months ago
- ☆63Updated last month
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆20Updated last year
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- Somatic structural variant caller for long-read data☆83Updated last month
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆28Updated this week
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆33Updated 3 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆48Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 6 months ago