A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).
☆25Jul 16, 2026Updated last week
Alternatives and similar repositories for Chorus2
Users that are interested in Chorus2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable machine learning pipeline for probe specificity prediction.☆14Mar 26, 2026Updated 4 months ago
- A parallel wrapper for LTR_FINDER☆56Mar 8, 2026Updated 4 months ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆22Jan 29, 2024Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 3 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆30Mar 5, 2018Updated 8 years ago
- Deep Learning Library for Spot Detection☆24Jun 4, 2026Updated last month
- ☆11Mar 25, 2019Updated 7 years ago
- ☆16Jun 30, 2022Updated 4 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 8 months ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tandem Repeats Finder: a program to analyze DNA sequences☆216Jan 16, 2023Updated 3 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆12Jul 11, 2026Updated 2 weeks ago
- ☆17Jun 21, 2022Updated 4 years ago
- ☆26Dec 15, 2025Updated 7 months ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆121Jul 22, 2025Updated last year
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆20Sep 29, 2025Updated 10 months ago
- ☆12Apr 14, 2021Updated 5 years ago
- ☆13Oct 30, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆218Jun 30, 2026Updated 3 weeks ago
- Linear time detection of Identity by Descent☆13Jul 22, 2011Updated 15 years ago
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- Genome-scale design tool for oligo hybridization probes☆72May 19, 2021Updated 5 years ago
- ☆29Apr 26, 2024Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 8 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆16Jun 6, 2024Updated 2 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Example vignette for dotdotdot software☆19Apr 9, 2021Updated 5 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆23Jul 27, 2023Updated 3 years ago
- stPlus: reference-based enhancement of spatial transcriptomics☆20Jan 6, 2024Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆28Oct 16, 2025Updated 9 months ago