bcgsc / pavfinderLinks
Post Assembly Variants Finder
☆18Updated 3 years ago
Alternatives and similar repositories for pavfinder
Users that are interested in pavfinder are comparing it to the libraries listed below
Sorting:
- ☆51Updated last year
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- ☆21Updated 6 years ago
- Code for phasing SVs with SNPs☆53Updated 5 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- ☆31Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ☆33Updated 3 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- ☆84Updated 10 months ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Structural variant caller☆55Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Variant annotation and merging pipeline☆41Updated 6 months ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- ☆36Updated last year
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- Detection and genotyping of structural variants☆19Updated 3 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- ☆51Updated 6 years ago
- ☆32Updated last year
- ☆35Updated 5 years ago
- SV calling for diploid assemblies☆30Updated last year