bcgsc / pavfinderLinks
Post Assembly Variants Finder
☆18Updated 3 years ago
Alternatives and similar repositories for pavfinder
Users that are interested in pavfinder are comparing it to the libraries listed below
Sorting:
- ☆49Updated last year
- ☆83Updated 8 months ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- ☆36Updated last year
- ☆51Updated 6 years ago
- Easy genomic regions for short-read variant calling☆45Updated 2 months ago
- Detection and genotyping of structural variants☆19Updated last month
- Pipeline for structural variant image curation and analysis.☆49Updated 3 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- Variant annotation and merging pipeline☆39Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- ☆21Updated 6 years ago
- Structural variant caller☆55Updated 3 years ago
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 8 months ago
- ☆31Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ☆31Updated 6 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated last month
- Population-wide Deletion Calling☆35Updated 7 months ago