oicr-gsi / debarcerLinks
Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
☆15Updated 4 years ago
Alternatives and similar repositories for debarcer
Users that are interested in debarcer are comparing it to the libraries listed below
Sorting:
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/☆8Updated 2 years ago
- Master of Pores 2☆23Updated 6 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆28Updated last year
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- new repo☆28Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- ☆16Updated last year
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- ☆32Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- A transposition caller.☆10Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- perSVade: personalized Structural Variation detection☆39Updated 4 months ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆9Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago