Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
☆15Apr 28, 2021Updated 5 years ago
Alternatives and similar repositories for debarcer
Users that are interested in debarcer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 8 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Mar 20, 2026Updated 4 months ago
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Feb 21, 2023Updated 3 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- An even better Python program to query .fasta files against the COI database of www.boldsystems.org☆11Oct 28, 2024Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 11 months ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- [DEPRECATED] MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22Updated this week
- ☆18Jul 28, 2026Updated 3 weeks ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Nov 29, 2022Updated 3 years ago
- GFF toolkit☆16May 23, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated 2 years ago
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆15Updated this week
- An implementation of vConv layer.☆11Apr 28, 2021Updated 5 years ago
- ☆16Jun 26, 2013Updated 13 years ago
- FinalVersions☆17Apr 3, 2017Updated 9 years ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆48May 21, 2017Updated 9 years ago
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- ☆56Mar 31, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- LoD calculator☆25Jul 11, 2019Updated 7 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Nextera Long Mate Pair analysis and processing tool☆18Mar 26, 2020Updated 6 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- ☆15Aug 18, 2025Updated last year
- Python implementation of de Bruijn graph for genome assembly☆13May 24, 2014Updated 12 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- Versatile FASTA/FASTQ demultiplexer.☆34Jun 10, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 5 months ago
- ☆16May 30, 2021Updated 5 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.☆34Mar 27, 2018Updated 8 years ago