oicr-gsi / debarcerLinks
Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
☆15Updated 4 years ago
Alternatives and similar repositories for debarcer
Users that are interested in debarcer are comparing it to the libraries listed below
Sorting:
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Updated last month
- Digenome-toolkit ver2.☆16Updated 4 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 7 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 3 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆26Updated 4 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 7 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Updated last month
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Updated 2 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Updated 8 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A transposition caller.☆11Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Updated 13 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Updated 3 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆16Updated 7 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Updated 5 years ago
- ☆15Updated 7 years ago