gerstung-lab / deepSNV
The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
☆14Updated 2 years ago
Alternatives and similar repositories for deepSNV:
Users that are interested in deepSNV are comparing it to the libraries listed below
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last week
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 5 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 weeks ago
- ☆21Updated 3 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Updated 4 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated 2 weeks ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- ☆18Updated 8 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated 7 months ago
- interactive plots for differential expression analysis☆32Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year