The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
☆17Jun 1, 2022Updated 4 years ago
Alternatives and similar repositories for deepSNV
Users that are interested in deepSNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 4 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 6 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆50Nov 20, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Aug 16, 2026Updated 2 weeks ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- a tool for annotation of immunoglobulin genes in genome assemblies☆15Sep 22, 2025Updated 11 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 6 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 5 months ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 8 years ago
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 4 years ago
- ☆28Jun 14, 2026Updated 2 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆52Jun 30, 2023Updated 3 years ago
- Volume-regularized NMF☆18Apr 14, 2022Updated 4 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆14Updated this week
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆88Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity☆41Feb 16, 2021Updated 5 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 3 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 4 months ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- A simple tool to monitor a process group and record its CPU, MEM and time cost.☆19Mar 21, 2023Updated 3 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆59Aug 9, 2015Updated 11 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Aug 7, 2023Updated 3 years ago
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆84Jul 23, 2026Updated last month
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 2 months ago
- R COBOL DI (Data Integration) Package : Import COBOL CopyBook data files directly into R as properly structured data frames.☆15Aug 7, 2024Updated 2 years ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- ☆16Apr 9, 2021Updated 5 years ago