gerstung-lab / deepSNVLinks
The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
☆17Updated 3 years ago
Alternatives and similar repositories for deepSNV
Users that are interested in deepSNV are comparing it to the libraries listed below
Sorting:
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 2 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated 3 weeks ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Updated 2 years ago
- DriverPower☆26Updated 10 months ago
- ☆18Updated 4 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- interactive plots for differential expression analysis☆34Updated 5 months ago
- Genomic data interpretation and visualization Workshop☆21Updated 3 weeks ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- ☆17Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- ☆14Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 2 months ago
- Python function for TMB snake plots☆16Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago