gerstung-lab / deepSNV
The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for deepSNV
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- ☆23Updated 3 years ago
- ☆21Updated 5 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 4 months ago
- iread☆23Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆15Updated 6 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 9 months ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 7 months ago
- ☆12Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Useful tools for working with Salmon output☆35Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- ☆18Updated 4 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Ultra-fast 5' and 3' demultiplexer☆24Updated 7 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Integrated copy number variation detection toolset☆25Updated 4 years ago
- ☆15Updated 7 years ago
- ☆21Updated 3 weeks ago
- Codes and Data for FFPEsig manuscript☆15Updated 10 months ago