gerstung-lab / deepSNVLinks
The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
β17Updated 3 years ago
Alternatives and similar repositories for deepSNV
Users that are interested in deepSNV are comparing it to the libraries listed below
Sorting:
- Isoform-level functional RNA-Seq analysis π§¬β35Updated last month
- Flexible Bayesian inference of mutational signaturesβ38Updated 2 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutationβ24Updated 2 months ago
- Filter and prioritize fusion callsβ20Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ42Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodesβ10Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processingβ25Updated 2 years ago
- β18Updated 4 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metricsβ14Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ19Updated 3 months ago
- β23Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicingβ37Updated 3 weeks ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer driversβ15Updated 7 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces armβ¦β18Updated last year
- Workflow for Sequenza, cellularity and ploidyβ25Updated 4 months ago
- Multi-sample cancer phylogeny reconstructionβ36Updated 8 years ago
- A set of tools to annotate VCF files with expression and readcount dataβ29Updated 9 months ago
- β17Updated last year
- Sashimi plots for RNA-seq data using detected transcriptsβ29Updated 9 months ago
- DriverPowerβ26Updated 11 months ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation testsβ13Updated 7 months ago
- β14Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Linksβ16Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicingβ16Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.β37Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.β19Updated 3 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.β14Updated 6 years ago
- ireadβ25Updated 4 years ago
- Comprehensive Human Expressed SequenceSβ18Updated 5 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges frameworkβ17Updated 11 months ago