gerstung-lab / deepSNVLinks
The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
☆16Updated 3 years ago
Alternatives and similar repositories for deepSNV
Users that are interested in deepSNV are comparing it to the libraries listed below
Sorting:
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆14Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- Comprehensive Human Expressed SequenceS☆18Updated last month
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated 3 months ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- ☆17Updated last year
- ☆18Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- ☆23Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- ☆21Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago