gerstung-lab / deepSNVLinks
The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
β17Updated 3 years ago
Alternatives and similar repositories for deepSNV
Users that are interested in deepSNV are comparing it to the libraries listed below
Sorting:
- Isoform-level functional RNA-Seq analysis π§¬β35Updated last week
- Flexible Bayesian inference of mutational signaturesβ37Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processingβ23Updated 2 years ago
- ireadβ25Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ42Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutationβ24Updated last month
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clβ¦β15Updated 6 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.β19Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ18Updated last month
- Filter and prioritize fusion callsβ20Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces armβ¦β18Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancerβ21Updated 4 years ago
- β17Updated last year
- A set of tools to annotate VCF files with expression and readcount dataβ29Updated 8 months ago
- a Shiny/R application to view and annotate copy number variationsβ28Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer driversβ15Updated 7 years ago
- interactive plots for differential expression analysisβ34Updated 5 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metricsβ14Updated 5 years ago
- β18Updated 4 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.β35Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq dataβ29Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.β19Updated 3 years ago
- Bedfile perturbation toolβ17Updated last month
- Differential expression and allelic analysis, nonparametric statisticsβ30Updated 10 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneitβ¦β41Updated last year
- FREE Divergence Error-Correcting DNA Barcodesβ10Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicingβ37Updated this week
- ORF Quantification pipeline for Alternative Splicingβ16Updated 4 years ago
- Calculate and plot distributions of genomic rangesβ26Updated 6 months ago
- v2.x of the microassembly based somatic variant callerβ23Updated 4 months ago