Alternatives and similar repositories for Apollo

Users that are interested in Apollo are comparing it to the libraries listed below

• lh3 / partig
  An experimental tool to estimate the similarity between all pairs of contigs
  ☆35Updated 4 years ago
• CMU-SAFARI / BLEND
  BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…
  ☆43Updated 2 years ago
• a-ludi / dentist
  Close assembly gaps using long-reads at high accuracy.
  ☆48Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 5 years ago
• CMU-SAFARI / AirLift
  AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…
  ☆27Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• VGP / vgp-tools
  ☆28Updated 4 months ago
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆57Updated last year
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆43Updated 9 months ago
• LuoGroup2023 / DeChat
  Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat
  ☆22Updated 3 months ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated 2 weeks ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated this week
• at-cg / RAFT
  ☆26Updated 11 months ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 3 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆35Updated 2 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆42Updated 6 months ago
• chfi / gfaestus
  GFA visualizer, GPU-accelerated using Vulkan
  ☆73Updated 3 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• RabbitBio / RabbitQCPlus
  A more efficient quality control tool for sequencing data
  ☆29Updated 2 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• yhg926 / public_kssd
  K-mer substring space decomposition
  ☆42Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 2 months ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated 2 weeks ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆21Updated 6 years ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 10 months ago
• bcgsc / RAILS
  🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
  ☆27Updated last year