CMU-SAFARI / ApolloLinks
Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described in the Bioinformatics journal paper (2020) by Firtina et al. at https://people.inf.ethz.ch/omutlu/pub/apollo-technology-independent-genome-asse…
☆27Updated 5 years ago
Alternatives and similar repositories for Apollo
Users that are interested in Apollo are comparing it to the libraries listed below
Sorting:
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- Close assembly gaps using long-reads at high accuracy.☆49Updated last year
- ☆28Updated 6 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated 2 months ago
- An experimental tool to estimate the similarity between all pairs of contigs☆39Updated 4 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Convert HAL to VG☆22Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆23Updated 5 months ago
- Experimental String Graph construction and processing☆27Updated 2 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Updated 2 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- PECAT, a phased error correct and assembly tool☆54Updated 2 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆38Updated this week
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated 2 months ago
- ☆28Updated last year
- Linear-time de novo Long Read Assembler☆41Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- ☆37Updated 2 years ago