CMU-SAFARI / ApolloLinks
Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described in the Bioinformatics journal paper (2020) by Firtina et al. at https://people.inf.ethz.ch/omutlu/pub/apollo-technology-independent-genome-asse…
☆27Updated 5 years ago
Alternatives and similar repositories for Apollo
Users that are interested in Apollo are comparing it to the libraries listed below
Sorting:
- Close assembly gaps using long-reads at high accuracy.☆49Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated last year
- ☆28Updated 5 months ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- An experimental tool to estimate the similarity between all pairs of contigs☆34Updated 4 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 5 months ago
- Experimental String Graph construction and processing☆27Updated 2 years ago
- Linear-time de novo Long Read Assembler☆41Updated 7 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆34Updated last month
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆54Updated last month
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- This is the Haplotypo repository☆20Updated last year
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated last month
- Synteny Mapping and Analysis Program☆27Updated 2 weeks ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆36Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago