CMU-SAFARI / ApolloLinks
Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Described in the Bioinformatics journal paper (2020) by Firtina et al. at https://people.inf.ethz.ch/omutlu/pub/apollo-technology-independent-genome-asse…
☆28Updated 5 years ago
Alternatives and similar repositories for Apollo
Users that are interested in Apollo are comparing it to the libraries listed below
Sorting:
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated last year
- Close assembly gaps using long-reads at high accuracy.☆50Updated last year
- An experimental tool to estimate the similarity between all pairs of contigs☆40Updated 4 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆25Updated 8 months ago
- GBWT-based handle graph☆31Updated last week
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆45Updated 2 years ago
- ☆28Updated 9 months ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Convert HAL to VG☆23Updated last year
- ☆26Updated 4 years ago
- This is the Haplotypo repository☆22Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆44Updated last year
- Linear-time de novo Long Read Assembler☆41Updated 2 months ago
- ☆41Updated 3 weeks ago
- Experimental String Graph construction and processing☆26Updated 2 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆23Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆30Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last month
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- General purpose utility related to GAF files☆29Updated last month