Variant quality checking scripts.
☆12Feb 4, 2016Updated 10 years ago
Alternatives and similar repositories for VariantQC
Users that are interested in VariantQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MSKCC Reis-Filho Lab pipeline thingy☆18Sep 6, 2026Updated last month
- Python function for TMB snake plots☆16Feb 12, 2026Updated 8 months ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- ☆11Jul 9, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 months ago
- Clinical machine-learning based interpreter of germline mutations.☆11Mar 13, 2025Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆31Apr 19, 2018Updated 8 years ago
- A collection of command line tools for working with sequencing data☆52Updated this week
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆14Jul 1, 2026Updated 3 months ago
- Analyze exome data for Mendelian disorders. Still in alpha-testing.☆10Apr 13, 2016Updated 10 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 4 months ago
- ☆28Sep 11, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genomics Platform Group Reporter☆10Oct 16, 2026Updated 2 weeks ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆20Mar 18, 2023Updated 3 years ago
- Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.☆12Jun 2, 2022Updated 4 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 8 years ago
- ☆35Sep 28, 2020Updated 6 years ago
- BaseSpace Python SDK☆37Nov 17, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Code used to generate manuscript figures and results.☆14Jan 10, 2024Updated 2 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆25Apr 26, 2023Updated 3 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆14Aug 4, 2026Updated 2 months ago
- Post Assembly Variants Finder☆18Mar 24, 2026Updated 7 months ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13Oct 22, 2026Updated last week
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆12Nov 8, 2025Updated 11 months ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆13Aug 11, 2026Updated 2 months ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Mar 5, 2021Updated 5 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago