Alternatives and similar repositories for viper:

Users that are interested in viper are comparing it to the libraries listed below

• PacificBiosciences / pb-human-wgs-workflow-wdl
  ☆12Updated last year
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated last year
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last week
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• e-jorsboe / fastNGSadmix
  Program for estimating admixture proportions and doing principal component analysis of a single NGS sample
  ☆10Updated 6 months ago
• Gabaldonlab / jloh
  A tool to extract LOH blocks from VCF, BAM and FASTA data
  ☆21Updated 5 months ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 2 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆21Updated 3 years ago
• PersonalizedOncology / ClinVAP
  Clinical Variant Annotation Pipeline
  ☆10Updated 4 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 8 years ago
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆15Updated last year
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated last year
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆34Updated 7 years ago
• mcfrith / dnarrange
  ☆16Updated last month
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 5 months ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• genome-in-a-bottle / giab_data_analysis
  This repository contains information about ongoing analysis performed by GIAB
  ☆14Updated 5 years ago
• Mesh89 / TranSurVeyor
  A transposition caller.
  ☆10Updated last year
• raphael-group / NAIBR
  Novel Adjacency Identification with Barcoded Reads
  ☆13Updated 2 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆17Updated 8 years ago
• delocalizer / streammd
  Single-pass probabilistic duplicate marking of alignments with a Bloom filter.
  ☆22Updated last year
• ComparativeGenomicsToolkit / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆11Updated 3 months ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago