MarWoes / viperLinks
VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false positives.
☆16Updated 3 years ago
Alternatives and similar repositories for viper
Users that are interested in viper are comparing it to the libraries listed below
Sorting:
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆10Updated 11 months ago
- ☆12Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- ☆12Updated last year
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆12Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- ☆25Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- ☆16Updated 6 months ago
- WhatsGNU: a tool for identifying proteomic novelty☆11Updated 5 months ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- ☆22Updated 3 weeks ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆19Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago