VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false positives.
☆16Jan 17, 2022Updated 4 years ago
Alternatives and similar repositories for viper
Users that are interested in viper are comparing it to the libraries listed below
Sorting:
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- ☆13Feb 14, 2023Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆11Aug 15, 2024Updated last year
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆14Mar 4, 2025Updated last year
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆17Mar 18, 2023Updated 2 years ago
- A shiny application to visualize MCscan result☆38Oct 7, 2022Updated 3 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Post Assembly Variants Finder☆18Oct 7, 2022Updated 3 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- ☆18May 19, 2022Updated 3 years ago
- A repo contains historical and updated MTEC libraries.☆18Feb 6, 2020Updated 6 years ago
- Easy Copy Number !☆21Aug 27, 2025Updated 6 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- SQL-like query language for the SAM/BAM file format☆29Sep 20, 2023Updated 2 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated 7 months ago
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- Synteny Mapping and Analysis Program☆30Feb 14, 2026Updated 2 weeks ago
- ☆29Mar 5, 2024Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆27Jul 26, 2024Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- visualize CNV data from targeted capture based sequencing data☆34May 10, 2021Updated 4 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆35Aug 1, 2025Updated 7 months ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- *UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for curr…☆33Nov 1, 2015Updated 10 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Dec 10, 2022Updated 3 years ago
- ☆10May 31, 2022Updated 3 years ago
- ☆10Aug 29, 2023Updated 2 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆39Dec 27, 2023Updated 2 years ago