ICGC-TCGA-PanCancer / CGP-Somatic-DockerLinks
Dockerised and simplified version of SeqWare-CGP-SomaticCore
☆14Updated 4 years ago
Alternatives and similar repositories for CGP-Somatic-Docker
Users that are interested in CGP-Somatic-Docker are comparing it to the libraries listed below
Sorting:
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- Toolbox package for organizing and working with TCGA data☆28Updated last month
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 11 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆13Updated last week
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 4 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- ☆14Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- Open-Source Software for Omic Data Analysis and Visualization☆35Updated last week
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆16Updated 3 years ago
- Published at Bioinformatics☆12Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- ☆10Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 8 months ago
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 7 months ago