Alternatives and similar repositories for CGP-Somatic-Docker

Users that are interested in CGP-Somatic-Docker are comparing it to the libraries listed below

• ICGC-TCGA-PanCancer / Seqware-BWA-Workflow
  This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
  ☆11Updated 2 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 5 months ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 7 years ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated 3 weeks ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated last month
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 3 years ago
• vsbuffalo / rna-seq-example
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆16Updated 12 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 8 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last month
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated 3 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆20Updated 10 months ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 7 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• oncogenetics / LocusExplorer
  An interactive graphical illustration of genetic associations and their biological context
  ☆16Updated last year
• jtleek / sva-devel
  ☆29Updated 10 months ago
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 6 years ago
• MonashBioinformaticsPlatform / varistran
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
  ☆20Updated 2 weeks ago