Dockerised and simplified version of SeqWare-CGP-SomaticCore
☆14Mar 5, 2021Updated 4 years ago
Alternatives and similar repositories for CGP-Somatic-Docker
Users that are interested in CGP-Somatic-Docker are comparing it to the libraries listed below
Sorting:
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- Whole genome workflows☆12Nov 9, 2024Updated last year
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 4 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- Source code for the BUDE Alanine Scan web application.☆12May 27, 2025Updated 9 months ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- 🍶 Genome assembly with short sequence reads☆25Jan 21, 2024Updated 2 years ago
- ☆12Dec 7, 2020Updated 5 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 3 years ago
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated last year
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated last year
- ☆16May 23, 2022Updated 3 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- TRUST4 manuscript evaluation☆16Jul 8, 2022Updated 3 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- The first CHM1 paper (Li, 2014)☆25Jul 9, 2014Updated 11 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 7 months ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomi…☆13Mar 1, 2016Updated 10 years ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 9 months ago
- Variant quality checking scripts.☆11Feb 4, 2016Updated 10 years ago