bcgsc / mavis
Merging, Annotation, Validation, and Illustration of Structural variants
☆74Updated last year
Alternatives and similar repositories for mavis:
Users that are interested in mavis are comparing it to the libraries listed below
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆100Updated 3 weeks ago
- Structural Variant Index☆71Updated 2 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- ☆39Updated 9 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 11 months ago
- Comprehensive benchmark of structural variant callers☆45Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- for visual evaluation of read support for structural variation☆51Updated 8 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 5 months ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- TIDDIT - structural variant calling☆74Updated last month
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- ☆39Updated 5 months ago
- BigWig and BAM utilities☆94Updated 10 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆104Updated 8 months ago