Merging, Annotation, Validation, and Illustration of Structural variants
☆76Aug 22, 2023Updated 2 years ago
Alternatives and similar repositories for mavis
Users that are interested in mavis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- ☆17Jan 15, 2025Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 4 months ago
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- Structural variation and indel detection by local assembly☆256Jun 23, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Nov 1, 2019Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆155Jun 20, 2026Updated last week
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 5 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 2 weeks ago
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 3 months ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- annotate a VCF with other VCFs/BEDs/tabixed files☆407Jun 16, 2026Updated 2 weeks ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 2 months ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Post Assembly Variants Finder☆18Mar 24, 2026Updated 3 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- sort genomic data☆36Nov 7, 2025Updated 7 months ago
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated 2 years ago
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated 8 months ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago