bcgsc / mavis
Merging, Annotation, Validation, and Illustration of Structural variants
☆75Updated last year
Alternatives and similar repositories for mavis:
Users that are interested in mavis are comparing it to the libraries listed below
- Characterization of Germline variants☆98Updated 3 years ago
- ☆39Updated 11 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆68Updated 7 months ago
- TIDDIT - structural variant calling☆74Updated last week
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- for visual evaluation of read support for structural variation☆52Updated 10 months ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- Tools for the analysis of structural variation in genomes☆78Updated last year
- Toolkit for calling structural variants using short or long reads☆102Updated last week
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last week
- ☆46Updated 5 years ago
- ☆39Updated 7 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆62Updated last year
- QDNAseq package for Bioconductor☆49Updated 8 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Structural Variant Index☆72Updated 4 months ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16Updated last year
- ☆51Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated 3 weeks ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated last month
- CNV screening and annotation tool☆25Updated 8 years ago