bcgsc / mavisLinks
Merging, Annotation, Validation, and Illustration of Structural variants
☆75Updated 2 years ago
Alternatives and similar repositories for mavis
Users that are interested in mavis are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- ☆44Updated last year
- A software for calculating telomere length☆73Updated 7 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Characterization of Germline variants☆99Updated 3 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- TIDDIT - structural variant calling☆78Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- BigWig and BAM utilities☆100Updated last year
- Read visualizer for structural variants☆84Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- ☆49Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 2 months ago
- ☆51Updated 6 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 9 months ago
- Structural Variant Index☆75Updated last year