ssadedin / groovy-ngs-utilsView external linksLinks
A collection of utilities for working with next generation (MPS) sequencing data in Groovy
☆15Updated this week
Alternatives and similar repositories for groovy-ngs-utils
Users that are interested in groovy-ngs-utils are comparing it to the libraries listed below
Sorting:
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated 2 weeks ago
- Post Assembly Variants Finder☆18Oct 7, 2022Updated 3 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Dec 17, 2024Updated last year
- ☆11Jul 3, 2022Updated 3 years ago
- ☆23Apr 14, 2022Updated 3 years ago
- ☆18Jan 24, 2018Updated 8 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 5 years ago
- Assembly Based ReAligner☆75May 24, 2018Updated 7 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆28Nov 16, 2024Updated last year
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Dec 5, 2019Updated 6 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Feb 25, 2022Updated 3 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 6 years ago
- topological data analysis of population-scale microbiomes☆32Jan 27, 2023Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆32Dec 15, 2020Updated 5 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 3 months ago
- ☆10Aug 29, 2023Updated 2 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 2 months ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆17Jan 12, 2023Updated 3 years ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签，训练神经网络模型；训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 3 years ago
- ☆10May 31, 2022Updated 3 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- A D library for computational biology and bioinformatics☆49Dec 3, 2021Updated 4 years ago
- Naive de Bruijn graph implementation in python☆37Oct 2, 2017Updated 8 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated 11 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- ☆11Mar 15, 2025Updated 11 months ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- ☆11Sep 22, 2025Updated 4 months ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 2 years ago