A tool for evaluate long-read de novo assembly results
☆51Aug 28, 2024Updated 2 years ago
Alternatives and similar repositories for Inspector
Users that are interested in Inspector are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for evaluating long-read de novo assembly results☆54Aug 25, 2024Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- k-mer based assembly evaluation☆354Jul 6, 2026Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 4 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 8 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆174Nov 24, 2025Updated 9 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- ☆15Aug 22, 2023Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- Automatic evaluation of HGTs☆32Jan 31, 2025Updated last year
- 🪡Correct and scaffold assemblies using long reads☆59Apr 1, 2026Updated 4 months ago
- SRF: Satellite Repeat Finder☆108Jan 8, 2024Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆130Jun 18, 2026Updated 2 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- HiFi error modeler and simulator with ploidy☆12Feb 12, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Yet another k-mer analyzer☆174Dec 30, 2025Updated 8 months ago
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆53Apr 1, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆118Jul 23, 2024Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 4 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Foreign Contamination Screening caller scripts and documentation☆175Mar 18, 2025Updated last year
- Structural variant caller for real-time long-read sequencing data☆62Dec 1, 2022Updated 3 years ago