cvdelannoy / poreTallyLinks
Benchmark MinION assembler pipelines and publish your results in a heartbeat!
☆15Updated 5 years ago
Alternatives and similar repositories for poreTally
Users that are interested in poreTally are comparing it to the libraries listed below
Sorting:
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- ☆14Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ☆11Updated 2 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Population-wide Deletion Calling☆35Updated 2 months ago
- ☆15Updated 7 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- transposable element typing pipeline☆18Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Find Unique genomic Regions☆30Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago