cvdelannoy / poreTallyLinks
Benchmark MinION assembler pipelines and publish your results in a heartbeat!
☆15Updated 5 years ago
Alternatives and similar repositories for poreTally
Users that are interested in poreTally are comparing it to the libraries listed below
Sorting:
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- ☆14Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- ☆45Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- ☆14Updated 2 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 8 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- ☆15Updated 7 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago