EddyRivasLab / hmmerLinks
HMMER: biological sequence analysis using profile HMMs
☆383Updated last month
Alternatives and similar repositories for hmmer
Users that are interested in hmmer are comparing it to the libraries listed below
Sorting:
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆251Updated last month
- Automatically exported from code.google.com/p/cdhit☆705Updated 3 years ago
- Genome-scale protein function classification☆351Updated this week
- The ViennaRNA Package☆369Updated 3 months ago
- antiSMASH☆226Updated 2 weeks ago
- Prodigal Gene Prediction Software☆512Updated last year
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆206Updated 3 months ago
- memote – the genome-scale metabolic model test suite☆142Updated 2 months ago
- WebLogo 3: Sequence Logos redrawn☆152Updated 5 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆310Updated 6 months ago
- Remote protein homology detection suite.☆598Updated 2 months ago
- Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).☆273Updated 5 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆400Updated last month
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆205Updated last week
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆193Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated last week
- CarveMe: genome-scale metabolic model reconstruction☆187Updated last month
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆248Updated last year
- RAxML Next Generation: faster, easier-to-use and more flexible☆440Updated this week
- Gene cluster comparison figure generator☆620Updated 11 months ago
- Robs manual for the computational genomics and bioinformatics class.☆263Updated 11 months ago
- snakemake pipeline for creating trees from sequence sets☆91Updated last week
- BGC Detection and Classification Using Deep Learning☆154Updated last year
- Efficient pythonic random access to fasta subsequences☆479Updated last month
- A brief, quick and dirty introduction to Sequence Similarity Networks☆25Updated 2 years ago
- Fast genome-wide functional annotation through orthology assignment☆664Updated 4 months ago
- Software for the visualization of sequence-function relationships☆206Updated 4 months ago
- Cython bindings and Python interface to HMMER3.☆148Updated this week
- NCBI Prokaryotic Genome Annotation Pipeline☆358Updated 2 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago