HMMER: biological sequence analysis using profile HMMs
☆416Jul 14, 2026Updated last week
Alternatives and similar repositories for hmmer
Users that are interested in hmmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,109Updated this week
- Accelerated BLAST compatible local sequence aligner.☆1,312Jul 13, 2026Updated last week
- Sequence analysis library used by Eddy/Rivas lab code☆53Updated this week
- Prodigal Gene Prediction Software☆550Jan 23, 2024Updated 2 years ago
- Remote protein homology detection suite.☆627Aug 12, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast genome-wide functional annotation through orthology assignment☆754May 22, 2026Updated 2 months ago
- Cython bindings and Python interface to HMMER3.☆165May 27, 2026Updated last month
- Automatically exported from code.google.com/p/cdhit☆734Oct 11, 2022Updated 3 years ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,582Jul 8, 2026Updated 2 weeks ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆285Apr 20, 2026Updated 3 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆267Updated this week
- Gene cluster comparison figure generator☆648Dec 22, 2025Updated 7 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆208Aug 25, 2025Updated 10 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆266Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid prokaryotic genome annotation☆992Jan 6, 2026Updated 6 months ago
- Genome-scale protein function classification☆385Jun 30, 2026Updated 3 weeks ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆475Jul 15, 2026Updated last week
- Rapid comparison and dereplication of genomes☆349Updated this week
- RNA secondary structure/sequence profiles for homology search and alignment☆129Updated this week
- Microbial RNA annotation☆305Apr 12, 2026Updated 3 months ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- Efficient phylogenomic software by maximum likelihood☆210Nov 4, 2021Updated 4 years ago
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 3 months ago
- sensitive and precise assembly of short sequencing reads☆168Oct 11, 2024Updated last year
- RAxML Next Generation: faster, easier-to-use and more flexible☆472Jul 6, 2026Updated 2 weeks ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,268Jul 1, 2026Updated 3 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- Align proteins to genomes with splicing and frameshift☆408Jan 5, 2026Updated 6 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆553Updated this week
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆200Jan 29, 2026Updated 5 months ago
- Read alignment statistics for metagenomics☆400Jul 10, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Toolbox for comparative genomics of MAGs☆91Apr 28, 2026Updated 2 months ago
- Genome assembly evaluation tool☆518Jun 10, 2026Updated last month
- A fast and sensitive gapped read aligner☆803Jun 1, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,219May 19, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆663Jul 10, 2026Updated last week
- SPAdes Genome Assembler☆953Jun 16, 2026Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆271Mar 20, 2025Updated last year