HMMER: biological sequence analysis using profile HMMs
☆419Jul 14, 2026Updated last month
Alternatives and similar repositories for hmmer
Users that are interested in hmmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,132Aug 24, 2026Updated last week
- Accelerated BLAST compatible local sequence aligner.☆1,316Aug 4, 2026Updated 3 weeks ago
- Sequence analysis library used by Eddy/Rivas lab code☆53Jul 18, 2026Updated last month
- Prodigal Gene Prediction Software☆552Jan 23, 2024Updated 2 years ago
- Remote protein homology detection suite.☆629Aug 12, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast genome-wide functional annotation through orthology assignment☆771Aug 13, 2026Updated 2 weeks ago
- Cython bindings and Python interface to HMMER3.☆169Aug 19, 2026Updated last week
- Automatically exported from code.google.com/p/cdhit☆731Oct 11, 2022Updated 3 years ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,590Aug 21, 2026Updated last week
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆289Aug 24, 2026Updated last week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆269Updated this week
- Gene cluster comparison figure generator☆652Dec 22, 2025Updated 8 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated last year
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆270Jul 20, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rapid prokaryotic genome annotation☆993Jan 6, 2026Updated 7 months ago
- Genome-scale protein function classification☆390Jun 30, 2026Updated 2 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆478Jul 15, 2026Updated last month
- Rapid comparison and dereplication of genomes☆354Jul 16, 2026Updated last month
- RNA secondary structure/sequence profiles for homology search and alignment☆131Updated this week
- Microbial RNA annotation☆309Apr 12, 2026Updated 4 months ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago
- Bioinformatics program inStrain☆192Mar 12, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 5 months ago
- sensitive and precise assembly of short sequencing reads☆169Oct 11, 2024Updated last year
- RAxML Next Generation: faster, easier-to-use and more flexible☆476Aug 18, 2026Updated last week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,286Aug 24, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 5 months ago
- Align proteins to genomes with splicing and frameshift☆417Jan 5, 2026Updated 7 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆555Aug 24, 2026Updated last week
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆203Jan 29, 2026Updated 7 months ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Genome assembly evaluation tool☆519Jun 10, 2026Updated 2 months ago
- A fast and sensitive gapped read aligner☆811Jun 1, 2026Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,242May 19, 2026Updated 3 months ago
- Toolbox for comparative genomics of MAGs☆92Jul 30, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆670Aug 7, 2026Updated 3 weeks ago
- SPAdes Genome Assembler☆956Jun 16, 2026Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year