Alternatives and similar repositories for hmmer

Users that are interested in hmmer are comparing it to the libraries listed below

• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆251Updated last month
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆362Updated 2 months ago
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆351Updated last week
• weizhongli / cdhit
  Automatically exported from code.google.com/p/cdhit
  ☆698Updated 2 years ago
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆508Updated last year
• antismash / antismash
  antiSMASH
  ☆223Updated last month
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆201Updated 2 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 5 months ago
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆305Updated 5 months ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆206Updated last week
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆594Updated last month
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆613Updated 10 months ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆269Updated 4 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆658Updated 3 months ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆400Updated 2 weeks ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆479Updated last month
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆25Updated 2 years ago
• amkozlov / raxml-ng
  RAxML Next Generation: faster, easier-to-use and more flexible
  ☆437Updated last month
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆142Updated last month
• wrpearson / fasta36
  Git repository for FASTA36 sequence comparison software
  ☆123Updated 2 months ago
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆382Updated 3 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆154Updated last year
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆553Updated last month
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆355Updated last week
• linsalrob / ComputationalGenomicsManual
  Robs manual for the computational genomics and bioinformatics class.
  ☆264Updated 10 months ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆148Updated last week
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆368Updated last week
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆203Updated 4 months ago
• RasmussenLab / vamb
  Variational autoencoder for metagenomic binning
  ☆303Updated last month