Strand and WGD aware syntenic gene identification
☆16Oct 16, 2025Updated last year
Alternatives and similar repositories for quota_Anchor
Users that are interested in quota_Anchor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆45Dec 11, 2025Updated 10 months ago
- Identification of conserved non-coding sequences in plants☆54Jun 9, 2026Updated 4 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆32Sep 22, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- ☆12Oct 25, 2026Updated last week
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆40Updated this week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts and datasets for the analysis on convergent genome evolution of animal terrestrialisation☆16Sep 27, 2025Updated last year
- Computational Pangenomics☆17Jun 1, 2022Updated 4 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆16Jan 29, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 3 years ago
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Convergent substitution detection tool based on the PCOC model☆32Dec 2, 2021Updated 4 years ago
- ☆11Feb 16, 2025Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆18Sep 5, 2024Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated 2 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Evolutionary Sparse Learning - Paired Species Contrast☆17Jul 22, 2026Updated 3 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆38Aug 21, 2026Updated 2 months ago
- ☆12Jun 12, 2023Updated 3 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Aug 10, 2026Updated 2 months ago
- Synteny matrix representation with maximum likelihood pipeline☆17Jul 7, 2021Updated 5 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year