solgenomics / SNPbinnerLinks
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
☆37Updated 6 years ago
Alternatives and similar repositories for SNPbinner
Users that are interested in SNPbinner are comparing it to the libraries listed below
Sorting:
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 3 months ago
 - Genome Scripts used in fungal comparative genomics☆66Updated 5 years ago
 - Application of pan-genome for population☆114Updated last week
 - Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 years ago
 - Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
 - QTL-seq pipeline to identify causative mutations responsible for a phenotype☆57Updated 9 months ago
 - Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
 - LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
 - Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
 - QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆82Updated 5 years ago
 - Mapping pipeline for data generated using Arima-HiC☆80Updated last year
 - My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
 - A pipeline for isoseq☆23Updated 7 years ago
 - A pipeline to generate a phylogenetic tree from huge SNP data☆91Updated last year
 - De novo annotation of young retrotransposons☆48Updated 3 years ago
 - Genomic related tools☆72Updated 3 years ago
 - Same species annotation lift over pipeline.☆98Updated 2 years ago
 - This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 7 years ago
 - A pipeline that accepts a VCF file to run through Admixture☆63Updated 10 months ago
 - VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆98Updated 2 months ago
 - BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 7 months ago
 - Error correction of ONT transcript reads☆58Updated 2 years ago
 - Long Reads Annotation pipeline☆72Updated 3 years ago
 - source code for EVM☆118Updated 11 months ago
 - NLR-Annotator upload☆73Updated 2 years ago
 - TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
 - ☆75Updated 5 years ago
 - BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
 - Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
 - ☆45Updated 8 years ago