solgenomics / SNPbinner
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
☆37Updated 6 years ago
Alternatives and similar repositories for SNPbinner:
Users that are interested in SNPbinner are comparing it to the libraries listed below
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆53Updated last week
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆49Updated 6 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated 3 weeks ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Useful bioinformatic scripts☆56Updated 4 months ago
- A program to call variants from genome alignment☆79Updated last year
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆20Updated 4 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated last week
- ☆43Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Structural variant merging tool☆49Updated 7 months ago
- NLR-Annotator upload☆65Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 4 months ago
- Genome Scripts used in fungal comparative genomics☆66Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- perSVade: personalized Structural Variation detection☆39Updated last month
- Full-Length RNA Analysis pipeline developted by BGI RD group.☆18Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆43Updated 8 years ago
- Genomic related tools☆70Updated 3 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago