β27Jan 30, 2025Updated last year
Alternatives and similar repositories for FastAAI
Users that are interested in FastAAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains R code for building a heatmap and histogram with the output of FastANIβ18Sep 14, 2021Updated 4 years ago
- π¦ π§¬π§βπ»π Microbial genomes-to-report pipelineβ75Mar 14, 2026Updated 4 months ago
- A taxonomic classifier of plasmidsβ28Jul 7, 2021Updated 5 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.β18Apr 4, 2026Updated 3 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.β17Jun 4, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomesβ22Apr 20, 2023Updated 3 years ago
- GTDB => NCBIβ15Nov 14, 2024Updated last year
- A package to annotate protein sequencesβ63Feb 23, 2025Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.β37Jul 21, 2025Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketchesβ54Jun 9, 2026Updated last month
- Hybrid Assembler for Plasmidsβ10Jul 28, 2022Updated 3 years ago
- β56Mar 29, 2026Updated 3 months ago
- alignment-free coverage calculation for metagenomic binning >100 times fasterβ54May 8, 2026Updated 2 months ago
- A toolbox for comparative genomics.β110May 26, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencingβ20May 11, 2022Updated 4 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolatesβ15Aug 26, 2024Updated last year
- β36Nov 11, 2022Updated 3 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.β224May 9, 2026Updated 2 months ago
- Tool to submit viral sequences to Genbank.β16May 14, 2026Updated 2 months ago
- Query sequence database by HMMs arranged in predefined synteny structureβ20Jun 23, 2026Updated last month
- Targeted Detection and Reconstruction of Plasmidsβ22May 7, 2024Updated 2 years ago
- viralVerify: viral contig verification toolβ76Feb 19, 2026Updated 5 months ago
- A comprehensive prokaryotic genome annotation pipelineβ90Jul 13, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.β37Jul 12, 2022Updated 4 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)β22Jul 8, 2024Updated 2 years ago
- Create a tree using Mash distancesβ188Oct 24, 2023Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculatorβ48Feb 5, 2026Updated 5 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systemsβ24Dec 20, 2024Updated last year
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSDβ26Nov 3, 2025Updated 8 months ago
- Toolbox for comparative genomics of MAGsβ91Apr 28, 2026Updated 2 months ago
- some useful scripts for working with genomics and sequencing dataβ18Oct 31, 2019Updated 6 years ago
- Plasmid and antimicrobial resistance pipelineβ16Apr 30, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then searβ¦β31Jan 24, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)β110Updated this week
- snakemake-powered cli to download genomes using NCBI datasetsβ15Aug 14, 2025Updated 11 months ago
- Download assembly files from NCBIβ13May 9, 2023Updated 3 years ago
- A healthy human gut genome collectionβ26Aug 21, 2025Updated 11 months ago
- Identify and remove contaminants from metagenome-assembled genomesβ18Feb 16, 2024Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifiβ¦β44Jul 23, 2021Updated 5 years ago