☆27Jan 30, 2025Updated last year
Alternatives and similar repositories for FastAAI
Users that are interested in FastAAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 3 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 6 months ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆36Jul 21, 2025Updated 9 months ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Updated this week
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated last month
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Apr 23, 2026Updated last week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A toolbox for comparative genomics.☆109May 26, 2021Updated 4 years ago
- ☆36Nov 11, 2022Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- ☆83Apr 10, 2026Updated 3 weeks ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 2 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Jul 8, 2024Updated last year
- Toolbox for comparative genomics of MAGs☆90Apr 28, 2026Updated last week
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 3 months ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Discovery of conserved gene clusters in multiple genomes☆131Jan 16, 2026Updated 3 months ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 8 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- A healthy human gut genome collection☆25Aug 21, 2025Updated 8 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆154Feb 5, 2026Updated 3 months ago
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆36Jul 12, 2022Updated 3 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆43Jul 23, 2021Updated 4 years ago
- geNomad: Identification of mobile genetic elements☆304Mar 29, 2026Updated last month
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Apr 10, 2026Updated 3 weeks ago