larssnip / HumGutLinks
A healthy human gut genome collection
☆24Updated 2 months ago
Alternatives and similar repositories for HumGut
Users that are interested in HumGut are comparing it to the libraries listed below
Sorting:
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Highly sensitive pathogen detection☆12Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- ☆42Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- ☆24Updated 9 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- De novo VIral Genome Annotator☆23Updated last year
- Find Unique genomic Regions☆32Updated 3 weeks ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- sunburst plots for taxonomy - working to update Krona☆41Updated last month
- MAG Circularization Method☆32Updated 2 weeks ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- ☆23Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 4 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago