larssnip / HumGutLinks
A healthy human gut genome collection
☆22Updated last month
Alternatives and similar repositories for HumGut
Users that are interested in HumGut are comparing it to the libraries listed below
Sorting:
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- Drug Resistance Prediction with Reference Graphs☆21Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- ☆23Updated 2 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 9 months ago
- De novo VIral Genome Annotator☆23Updated 10 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 5 months ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆26Updated 5 months ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- ☆13Updated last year
- ☆22Updated 2 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 8 months ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Microbiome profiling☆16Updated 2 months ago
- ☆24Updated 5 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 4 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 2 months ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 7 months ago
- ☆31Updated 3 years ago