tseemann / sixess
🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files
☆23Updated 6 years ago
Alternatives and similar repositories for sixess:
Users that are interested in sixess are comparing it to the libraries listed below
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Gene-flank analysis tool☆27Updated 3 months ago
- Calculate assocations between genes and traits☆23Updated last week
- whole genome MLST analysis☆41Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated 2 weeks ago
- IslandPath standalone software☆31Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Gene Absence Presence Identification tool.☆26Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- ☆20Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆16Updated 3 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year