tseemann / sixessLinks
π¬π Rapid 16s rRNA identification from isolate FASTQ files
β24Updated 7 years ago
Alternatives and similar repositories for sixess
Users that are interested in sixess are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing readsβ36Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genomeβ43Updated 5 years ago
- A tool for removing redundant genomes from a set of assembliesβ77Updated 3 months ago
- Split Kmer Analysisβ66Updated 3 years ago
- reference-based long read assemblies of bacterial genomesβ51Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencingβ69Updated 4 years ago
- β37Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samplesβ46Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomesβ54Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)β61Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposesβ34Updated 6 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)β45Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generatorβ50Updated 3 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifiβ¦β42Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ43Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap fillingβ57Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graafβ50Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.β62Updated 2 years ago
- whole genome MLST analysisβ50Updated 6 months ago
- A toolkit for prokaryotic comparative genomicsβ51Updated 2 months ago
- Long read metagenomics practical at EBAME18β18Updated 7 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological dataβ47Updated 2 months ago
- Interactive, web tool for exploring pan-genome of bacterial strainsβ48Updated 3 years ago
- Order and orientation of complete bacterial genomesβ29Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequencesβ27Updated 3 years ago
- Gene-flank analysis toolβ34Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipelineβ41Updated 3 years ago
- Predict plasmids from uncorrected long read dataβ41Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016β¦β35Updated 2 years ago
- all methods related to Enterobaseβ44Updated last year