tseemann / sixessLinks
π¬π Rapid 16s rRNA identification from isolate FASTQ files
β24Updated 7 years ago
Alternatives and similar repositories for sixess
Users that are interested in sixess are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing readsβ35Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genomeβ41Updated 5 years ago
- whole genome MLST analysisβ46Updated last month
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samplesβ45Updated last year
- Split Kmer Analysisβ65Updated 3 years ago
- A tool for removing redundant genomes from a set of assembliesβ73Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ42Updated 4 years ago
- Gene-flank analysis toolβ28Updated 7 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifiβ¦β41Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomesβ54Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequencesβ26Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generatorβ50Updated 2 years ago
- reference-based long read assemblies of bacterial genomesβ50Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)β62Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graafβ49Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016β¦β34Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignmentβ60Updated last month
- β36Updated 3 years ago
- Order and orientation of complete bacterial genomesβ28Updated last month
- RCandy: an R package for visualising homologous recombination events in bacterial genomesβ24Updated 3 years ago
- Long read metagenomics practical at EBAME18β18Updated 6 years ago
- Recombination-free treesβ59Updated 4 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculatorβ43Updated last week
- Calculate assocations between genes and traitsβ25Updated 5 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenomeβ49Updated 2 years ago
- β18Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencingβ70Updated 4 years ago
- tools for assessing the accuracy of genome assembliesβ34Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCAβ37Updated 4 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line toolβ32Updated 3 months ago