snapper
☆13Jul 8, 2024Updated last year
Alternatives and similar repositories for Snapper
Users that are interested in Snapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆55May 5, 2026Updated 2 weeks ago
- ☆18Mar 20, 2025Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Apr 10, 2026Updated last month
- ☆11Jul 3, 2022Updated 3 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- ☆25Apr 20, 2023Updated 3 years ago
- ☆20Nov 17, 2025Updated 6 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆16Mar 31, 2022Updated 4 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- ☆19Oct 4, 2023Updated 2 years ago
- This project is designed to find the potential modifications in bacterial genomes.☆15Nov 6, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆14Mar 12, 2026Updated 2 months ago
- web viewer for plasmid DNA, RNA, and proteins☆16Jun 16, 2017Updated 8 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Oct 24, 2025Updated 6 months ago
- Gaussian process models for optimizing channelrhodopsin properties.☆13May 30, 2020Updated 5 years ago
- ☆13Sep 4, 2017Updated 8 years ago
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 4 months ago
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆75May 20, 2022Updated 4 years ago
- Overview of our data for microbial genomic benchmarking☆37Apr 22, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- ☆17May 4, 2026Updated 2 weeks ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 2 months ago
- Count kmers with a more efficient (faster) hash table☆24Jun 8, 2024Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Apr 27, 2026Updated 3 weeks ago
- ☆10Oct 30, 2018Updated 7 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 2 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year