DNKonanov / SnapperLinks
snapper
☆13Updated last year
Alternatives and similar repositories for Snapper
Users that are interested in Snapper are comparing it to the libraries listed below
Sorting:
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated 3 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- ☆25Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Updated 3 weeks ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 10 months ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Updated 8 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆24Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated this week
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆30Updated this week
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Updated 6 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Updated 3 years ago
- ☆29Updated 4 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- ☆17Updated 3 weeks ago
- ☆22Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- Genomic sequence aligner☆33Updated 3 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆15Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- UFCG: Universal Fungal Core Genes☆35Updated 6 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 10 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago