DNKonanov / Snapper
snapper
☆14Updated 6 months ago
Alternatives and similar repositories for Snapper:
Users that are interested in Snapper are comparing it to the libraries listed below
- Microbial agile accurate SNP Typer☆29Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Tiberius is a deep learning gene finder.☆44Updated this week
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Bacterial GWAS analysis☆34Updated last month
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 4 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- ☆24Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆45Updated 7 months ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 4 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆39Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆20Updated last week
- Prophage Activity Estimator☆26Updated 7 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- viralComplete: BLAST-based viral completeness verification☆24Updated 3 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆24Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆48Updated 6 months ago
- strain-level analysis tools☆33Updated 2 months ago
- Quality control plotting for long reads☆10Updated 8 months ago
- Find Unique genomic Regions☆29Updated last week
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆20Updated 3 years ago