DNKonanov / Snapper
snapper
☆14Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for Snapper
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 7 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- Bacterial GWAS analysis☆32Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- deep learning gene finder☆33Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Evaluating Nanopore-based bacterial variant calling☆15Updated last month
- Prophage Activity Estimator☆26Updated 5 months ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- ☆23Updated 9 months ago
- ☆30Updated 11 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆18Updated 6 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆20Updated 3 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year