Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification of antimicrobial peptides (AMPs) as small open reading frames (smORFs) and protein fragments.
☆13May 10, 2025Updated 10 months ago
Alternatives and similar repositories for AMP-SEMiner
Users that are interested in AMP-SEMiner are comparing it to the libraries listed below
Sorting:
- AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning☆13Aug 15, 2022Updated 3 years ago
- A novel approach to the classification of antimicrobial peptides (AMPs) using pre-trained language models to create contextual vectorized…☆17Sep 10, 2024Updated last year
- The GAN model for designing AMP☆16Aug 19, 2025Updated 6 months ago
- The implementation of the paper sAMPpred-GAT: Prediction of Antimicrobial Peptide by Graph Attention Network and Predicted Peptide Struct…☆35Oct 1, 2022Updated 3 years ago
- ☆19Oct 4, 2023Updated 2 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Mar 25, 2023Updated 2 years ago
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆56Nov 26, 2024Updated last year
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- ☆15Nov 11, 2025Updated 3 months ago
- ☆30Jan 21, 2024Updated 2 years ago
- ☆63Feb 27, 2024Updated 2 years ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆41Aug 1, 2025Updated 7 months ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆17Feb 23, 2026Updated 2 weeks ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- ☆10Dec 2, 2025Updated 3 months ago
- Application of deep generative model discovers novel and diverse functional peptides against microbial resistance☆11Dec 22, 2022Updated 3 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This …☆13Nov 12, 2024Updated last year
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- A Python+Web tool visualizes ward placements and smoke usage from professional matches using DOTABUFF data. It creates interactive heatma…☆22Nov 16, 2025Updated 3 months ago
- A General Quantum Software☆18Feb 24, 2026Updated last week
- ☆12Jun 21, 2025Updated 8 months ago
- ☆90Oct 6, 2022Updated 3 years ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆53Nov 15, 2023Updated 2 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- Cellular content mining and particle localization☆10Sep 21, 2025Updated 5 months ago
- ☆13Apr 22, 2021Updated 4 years ago
- ☆15Feb 5, 2025Updated last year
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Updated this week
- A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments☆11Dec 1, 2020Updated 5 years ago
- MetaFX – library for feature extraction from whole-genome metagenome sequencing data☆16Feb 24, 2026Updated last week
- Frailty analysis including FRIGHT age and AFRAID clock☆12Apr 3, 2020Updated 5 years ago
- ☆17May 21, 2025Updated 9 months ago
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated last year
- Fast semantic search for biorXiv manuscripts☆12Feb 16, 2025Updated last year
- Pan-genome Analysis☆12May 4, 2025Updated 10 months ago
- ☆11Sep 7, 2023Updated 2 years ago