Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification of antimicrobial peptides (AMPs) as small open reading frames (smORFs) and protein fragments.
☆15May 10, 2025Updated last year
Alternatives and similar repositories for AMP-SEMiner
Users that are interested in AMP-SEMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LLMs for high-throughput mining and generation of antimicrobial peptides☆28Oct 10, 2025Updated 11 months ago
- The GAN model for designing AMP☆17Aug 19, 2025Updated last year
- Designing antimicrobial peptides (AMPs) is awesome.☆38Sep 14, 2026Updated 2 weeks ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆46Aug 1, 2025Updated last year
- AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning☆13Aug 15, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A novel approach to the classification of antimicrobial peptides (AMPs) using pre-trained language models to create contextual vectorized…☆18Sep 10, 2024Updated 2 years ago
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆59Sep 1, 2025Updated last year
- The implementation of the paper sAMPpred-GAT: Prediction of Antimicrobial Peptide by Graph Attention Network and Predicted Peptide Struct…☆36Oct 1, 2022Updated 3 years ago
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- ☆19Feb 25, 2026Updated 7 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆28Mar 25, 2023Updated 3 years ago
- SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network☆15Nov 17, 2022Updated 3 years ago
- ☆20Sep 5, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- 基于mmpi-2，采用中国常模，附编码型详细解释和剖面图☆17Nov 9, 2025Updated 10 months ago
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆12Apr 28, 2025Updated last year
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆63Nov 26, 2024Updated last year
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆13Mar 21, 2024Updated 2 years ago
- ☆22Oct 4, 2023Updated 2 years ago
- This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology fi…☆15Nov 24, 2020Updated 5 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- ☆31Jan 21, 2024Updated 2 years ago
- ☆18Oct 16, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- ☆23Sep 19, 2025Updated last year
- A pipeline creation tool using Snakemake☆14Sep 17, 2026Updated last week
- ☆65Feb 27, 2024Updated 2 years ago
- Transformer Based Language Model for Peptide Property Prediction☆57Aug 2, 2024Updated 2 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- Greening lab hydrogenase database☆19Jun 26, 2025Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆15Dec 21, 2022Updated 3 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Apr 22, 2021Updated 5 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 7 months ago
- ☆12Feb 20, 2026Updated 7 months ago
- Pan-genome Analysis☆14May 4, 2025Updated last year
- ☆89Oct 6, 2022Updated 3 years ago
- ☆21Jun 20, 2022Updated 4 years ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago