Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification of antimicrobial peptides (AMPs) as small open reading frames (smORFs) and protein fragments.
☆14May 10, 2025Updated 10 months ago
Alternatives and similar repositories for AMP-SEMiner
Users that are interested in AMP-SEMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning☆13Aug 15, 2022Updated 3 years ago
- A novel approach to the classification of antimicrobial peptides (AMPs) using pre-trained language models to create contextual vectorized…☆17Sep 10, 2024Updated last year
- The GAN model for designing AMP☆17Aug 19, 2025Updated 7 months ago
- The implementation of the paper sAMPpred-GAT: Prediction of Antimicrobial Peptide by Graph Attention Network and Predicted Peptide Struct…☆35Oct 1, 2022Updated 3 years ago
- Streamlit web application to deploy a machine learning binary classifier to predict the activity of antimicrobial peptides☆10Dec 13, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆19Oct 4, 2023Updated 2 years ago
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆41Aug 1, 2025Updated 7 months ago
- 基于mmpi-2,采用中国常模,附编码型详细解释和剖面图☆15Nov 9, 2025Updated 4 months ago
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆57Nov 26, 2024Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Mar 25, 2023Updated 3 years ago
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆13Mar 21, 2024Updated 2 years ago
- This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology fi…☆14Nov 24, 2020Updated 5 years ago
- ☆30Jan 21, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Designing antimicrobial peptides (AMPs) is awesome.☆27Mar 21, 2026Updated last week
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Updated this week
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- ☆63Feb 27, 2024Updated 2 years ago
- A pipeline creation tool using Snakemake☆13Updated this week
- ☆18Oct 16, 2025Updated 5 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- ☆13Apr 22, 2021Updated 4 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Feb 20, 2026Updated last month
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆55Nov 15, 2023Updated 2 years ago
- Pan-genome Analysis☆12May 4, 2025Updated 10 months ago
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆19Updated this week
- A Python+Web tool visualizes ward placements and smoke usage from professional matches using DOTABUFF data. It creates interactive heatma…☆22Nov 16, 2025Updated 4 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- ☆10Dec 2, 2025Updated 3 months ago
- ☆12Aug 2, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆89Oct 6, 2022Updated 3 years ago
- ☆17May 21, 2025Updated 10 months ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 4 months ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year