mayuefine / c_AMPs-prediction

Related projects ⓘ

Alternatives and complementary repositories for c_AMPs-prediction

• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆85Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 9 months ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆41Updated last month
• ml4bio / USPNet
  Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
  ☆28Updated 7 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆30Updated 5 months ago
• Superzchen / iLearnPlus
  iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…
  ☆95Updated 7 months ago
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆37Updated 3 months ago
• amirpandi / Deep_AMP
  Generator and regressor neural networks for antimicrobial peptides
  ☆21Updated 9 months ago
• tymor22 / tm-vec
  ☆63Updated last month
• weizhongli / cdhit-web-server
  ☆17Updated 2 years ago
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆38Updated 8 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆87Updated 2 months ago
• a96123155 / UTR-LM
  ☆72Updated last month
• ntranoslab / esm-variants
  ☆66Updated last year
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆66Updated 9 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated last month
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆25Updated 8 months ago
• tlawrence3 / amPEPpy
  ☆21Updated 10 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆46Updated 6 months ago
• a96123155 / TransPHLA-AOMP
  ☆40Updated 3 years ago
• bm2-lab / PanPep
  ☆44Updated 11 months ago
• TencentAILabHealthcare / DeepAIR
  ☆30Updated last year
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆15Updated 5 months ago
• joy50706 / iAMPCN
  ☆11Updated 4 months ago
• yanzhanglab / Graph2GO
  Graph-based representation learning method for protein function prediction
  ☆24Updated 4 years ago
• CatIIIIIIII / RNAErnie
  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
  ☆34Updated last month
• kingstdio / ECRECer
  Dual-core Multi-agent Learning Framework For EC Number Prediction
  ☆18Updated 2 weeks ago
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆100Updated 3 years ago
• Tsedao / MultiRM
  [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …
  ☆29Updated 3 years ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆34Updated 9 months ago