SWittouck / SCARAPLinks
A toolkit for prokaryotic comparative genomics
☆50Updated 7 months ago
Alternatives and similar repositories for SCARAP
Users that are interested in SCARAP are comparing it to the libraries listed below
Sorting:
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated this week
- Bacterial GWAS analysis☆43Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Calculate assocations between genes and traits☆25Updated 5 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆88Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 5 years ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆59Updated this week
- Split Kmer Analysis☆65Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- BEAV: Bacterial Element Annotation reVamped☆68Updated last week
- Gene-flank analysis tool☆29Updated 8 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- Discover and annotate the virome☆49Updated this week
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- whole genome MLST analysis☆46Updated 2 months ago
- Prediction of prophages from bacterial genomes☆79Updated 2 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Bifrost graph gene caller.☆96Updated 11 months ago
- IslandPath standalone software☆33Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago