ying14 / yingtools2Links
Ying's tools for analysis, with particular focus on microbiome data
☆41Updated 2 weeks ago
Alternatives and similar repositories for yingtools2
Users that are interested in yingtools2 are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆37Updated 4 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Linear Decomposition Model☆24Updated 2 years ago
- R package for downstream Microbiome analysis☆30Updated 8 months ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- R shiny app for interactive microbiome analysis☆55Updated 2 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated 10 months ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Updated 6 months ago
- R package computes correlation for relative abundances☆13Updated 8 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last month
- Microbiome research☆21Updated 3 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- ☆25Updated 4 years ago
- Tools for visualising microbial community amplicon data☆67Updated last week
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆94Updated 2 weeks ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- ☆41Updated 7 years ago