ying14 / yingtools2Links
Ying's tools for analysis, with particular focus on microbiome data
☆41Updated this week
Alternatives and similar repositories for yingtools2
Users that are interested in yingtools2 are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Linear Decomposition Model☆24Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last month
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Updated 7 months ago
- Microbiome research☆21Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 4 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- R shiny app for interactive microbiome analysis☆55Updated 3 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- ☆41Updated 7 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆14Updated 11 months ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆93Updated this week
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 2 months ago
- R package for downstream Microbiome analysis☆30Updated 9 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- A modest re-desing update for the classic FastQC report.☆27Updated 2 weeks ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- ☆20Updated 5 years ago