Alternatives and similar repositories for ancIBD

Users that are interested in ancIBD are comparing it to the libraries listed below

• ruidlpm / pathPhynder
  A workflow for integrating ancient lineages into present-day phylogenies.
  ☆29Updated 3 months ago
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆15Updated 6 months ago
• davidebolo1993 / cosigt
  COsine-based SImilarity Genotyper using pangenomes
  ☆21Updated last week
• Markusjsommer / TD2
  TD2
  ☆19Updated 4 months ago
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆30Updated 2 weeks ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆20Updated 10 months ago
• OmarOakheart / nPhase
  Ploidy agnostic phasing pipeline and algorithm
  ☆48Updated last year
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆32Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 10 months ago
• Sendrowski / fastDFE
  Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…
  ☆17Updated 2 months ago
• baozg / phased-assembly-check
  ☆31Updated 9 months ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆28Updated 9 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated this week
• lipingfangs / VAP
  a programme for visualization of short sequence alignment and path navigation in graphical pan-genome
  ☆24Updated last year
• leospeidel / twigstats
  Time-stratified f-statistics
  ☆14Updated 2 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• MoritzBlumer / winpca
  WinPCA. A package for windowed principal component analysis.
  ☆35Updated last week
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• SchriderLab / Timesweeper
  Python package for detecting positive selective sweeps using time-series genomics sampling data.
  ☆20Updated last year
• SandraLouise / SVJedi-graph
  SV genotyper for long reads with a variation graph
  ☆12Updated 2 months ago
• tangerzhang / calc_switchErr
  ☆27Updated 6 months ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆21Updated 5 months ago
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆11Updated last year
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆19Updated 2 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• linguoliang / puzzle-hi-c
  ☆17Updated 9 months ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago