JLSteenwyk / orthohmmLinks
Improved Inference of Ortholog Groups using Hidden Markov Models
☆37Updated this week
Alternatives and similar repositories for orthohmm
Users that are interested in orthohmm are comparing it to the libraries listed below
Sorting:
- ☆41Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 6 months ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- Phyling: phylogenetic inference from annotated genomes☆27Updated last week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- ☆26Updated 4 years ago
- tree visualization for tree + annotation data☆40Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- ☆27Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- ☆30Updated 8 months ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated 10 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆34Updated 2 weeks ago
- UFCG: Universal Fungal Core Genes☆34Updated last month
- A program for detection of tRNA genes☆67Updated 2 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆18Updated 7 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- ☆16Updated 2 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- ☆38Updated last year
- Influenza genome analysis Nextflow workflow☆28Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated last month
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- Genomic sequence aligner☆26Updated this week