Alternatives and similar repositories for orthohmm

Users that are interested in orthohmm are comparing it to the libraries listed below

• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆31Updated 6 months ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆22Updated 2 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated 2 years ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆32Updated 2 months ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆50Updated 6 months ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 5 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆29Updated last year
• evolbioinfo / booster
  ☆28Updated 5 years ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆60Updated 2 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• xonq / mycotools
  Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…
  ☆14Updated 2 months ago
• reslp / phylociraptor
  rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
  ☆26Updated last month
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated last week
• ariloytynoja / prank-msa
  Automatically exported from code.google.com/p/prank-msa
  ☆27Updated 2 months ago
• mathjeff / Mapper
  Genomic sequence aligner
  ☆25Updated 2 weeks ago
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆13Updated 10 months ago
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆25Updated 5 years ago
• balabanmetin / uDance
  ☆43Updated last year
• BenoitMorel / AleRax
  Gene tree - species tree reconciliation from gene tree distributions
  ☆29Updated 3 weeks ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆66Updated 5 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• steineggerlab / ufcg
  UFCG: Universal Fungal Core Genes
  ☆33Updated 4 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆41Updated last week
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆76Updated this week
• gengit / PosiGene
  ☆26Updated 4 years ago
• iqtree / iqtree3
  IQ-TREE version 3: software for phylogenetics
  ☆47Updated last week
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 2 months ago