JLSteenwyk / orthohmm
Improved Inference of Ortholog Groups using Hidden Markov Models
☆34Updated 2 months ago
Alternatives and similar repositories for orthohmm
Users that are interested in orthohmm are comparing it to the libraries listed below
Sorting:
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 4 months ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆13Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 5 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆32Updated last month
- ☆43Updated last year
- Bacterial GWAS analysis☆40Updated 3 weeks ago
- ☆28Updated 4 years ago
- A program for detection of tRNA genes☆60Updated 2 years ago
- Genome-Genome circle synteny☆25Updated last year
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆49Updated 5 months ago
- Computational Analysis of Gene Expression Evolution☆40Updated last month
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 9 months ago
- ☆26Updated 4 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- A program for divvying or partially filtering multiple sequence alignments☆25Updated 5 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆39Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 9 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆25Updated 3 weeks ago
- ☆22Updated 11 years ago
- Tiberius is a deep learning gene finder.☆57Updated last week
- Gene tree - species tree reconciliation from gene tree distributions☆27Updated this week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Eukaryotic genome annotation software.☆18Updated last week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month