Alternatives and similar repositories for orthohmm:

Users that are interested in orthohmm are comparing it to the libraries listed below

• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆30Updated 3 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆29Updated 3 months ago
• evolbioinfo / booster
  ☆28Updated 4 years ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆60Updated 2 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆21Updated 3 weeks ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆49Updated 4 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆44Updated 7 months ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆31Updated this week
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated 11 months ago
• balabanmetin / uDance
  ☆43Updated last year
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆52Updated last week
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆73Updated 3 weeks ago
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆41Updated 11 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated 2 weeks ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆39Updated 3 weeks ago
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆18Updated 4 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆73Updated last week
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆35Updated last year
• xonq / mycotools
  ☆13Updated 2 months ago
• formbio / FLAG
  ☆31Updated 8 months ago
• reslp / phylociraptor
  rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
  ☆25Updated last month
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆40Updated this week
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆46Updated 3 weeks ago
• transXpress / transXpress
  transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
  ☆27Updated last year
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• BenoitMorel / AleRax
  Gene tree - species tree reconciliation from gene tree distributions
  ☆27Updated 5 months ago
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆24Updated 5 years ago