oganm / allenBrainLinks
Acquiring images from allen brain atlas, mouse ISH experiments in R.
☆17Updated last year
Alternatives and similar repositories for allenBrain
Users that are interested in allenBrain are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated 3 months ago
- Building Gene Sets and Mapping mFISH Data☆16Updated 4 months ago
- Human cortical cell types☆25Updated 6 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Updated 3 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- ☆48Updated 7 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 3 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 5 years ago
- Repository for storing prototype functionality implementations for the BKP☆38Updated 3 weeks ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 7 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Helper functions for working with inForm data.☆20Updated 3 years ago
- scRNA-seq data visualization from scrattch☆28Updated 4 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Updated 3 months ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 7 years ago
- ☆71Updated 7 months ago
- ☆30Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 6 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- Hierarchical classification of cells☆28Updated last year
- Image processing pipeline for spatial projects☆17Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆45Updated 7 months ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- ☆30Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Querying cellular states and programs by learning representations of gene sets☆14Updated last month
- Analysis pipeline for the adolescent mouse nervous system project☆24Updated 7 years ago