Acquiring images from allen brain atlas, mouse ISH experiments in R.
☆17Mar 20, 2024Updated 2 years ago
Alternatives and similar repositories for allenBrain
Users that are interested in allenBrain are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated 11 months ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 11 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- This repository contains HCA Benchmarking codes☆27Nov 11, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 9 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 11 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆42Apr 7, 2026Updated 3 months ago
- The Vini in silico model of cancer☆12Mar 7, 2026Updated 4 months ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 5 years ago
- Brain Analysis using Graph Theory☆12Jul 5, 2019Updated 7 years ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆23May 22, 2026Updated last month
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- Repository for storing prototype functionality implementations for the BKP☆50May 20, 2026Updated 2 months ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆18Sep 24, 2024Updated last year
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆14Jul 7, 2026Updated 2 weeks ago
- ☆13Feb 16, 2019Updated 7 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Apr 20, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- ☆49Mar 1, 2018Updated 8 years ago
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Source code of the R packge BgeeDB to use data from the Bgee database☆16May 7, 2026Updated 2 months ago
- ☆14Sep 2, 2020Updated 5 years ago
- COS 429 final project completed by Adam Fisch and Max Shatkhin. Using image processing techniques including Eulerian Video Magnification …☆10Sep 25, 2015Updated 10 years ago
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆41Mar 31, 2026Updated 3 months ago
- Cytograph version used for adult human-brain analysis☆102Jun 5, 2026Updated last month
- Linear trajectory inference for single-cell RNA-seq☆63Nov 26, 2025Updated 7 months ago
- An r package that works as a wrapper to homologene☆49Nov 2, 2023Updated 2 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 7 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆26May 18, 2021Updated 5 years ago
- NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neuron…☆77Jun 12, 2026Updated last month