oganm / allenBrainLinks
Acquiring images from allen brain atlas, mouse ISH experiments in R.
☆16Updated last year
Alternatives and similar repositories for allenBrain
Users that are interested in allenBrain are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 2 months ago
- Building Gene Sets and Mapping mFISH Data☆16Updated 2 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Updated 3 years ago
- ☆9Updated 6 years ago
- Repository for storing prototype functionality implementations for the BKP☆30Updated this week
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Human cortical cell types☆24Updated 5 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆23Updated 7 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 3 months ago
- scRNA-seq data visualization from scrattch☆26Updated 2 months ago
- ☆49Updated 7 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Brain Cell Type Specific Gene Expression Analysis☆15Updated last year
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆17Updated 9 months ago
- Helper functions for working with inForm data.☆18Updated 3 years ago
- ☆28Updated 3 years ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- ☆66Updated last month
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Updated 2 years ago
- Image processing pipeline for spatial projects☆15Updated last year
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆23Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆21Updated this week
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated last month
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Pathway-based trajectory inference method for time-series scRNAseq data☆25Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago