Generate signature matrix from single cell data.
☆12Apr 13, 2021Updated 5 years ago
Alternatives and similar repositories for scSigR
Users that are interested in scSigR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- ☆13Jan 15, 2021Updated 5 years ago
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- ☆15Sep 21, 2021Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 5 years ago
- Browser extension for accessing open data resources in the biomedical domain☆11Jan 8, 2023Updated 3 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆17Jun 30, 2024Updated 2 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆16Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Tempora…☆19May 20, 2025Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated 2 years ago
- From IDAT to beta.☆25Jul 13, 2018Updated 8 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆33Nov 16, 2020Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 5 months ago
- ☆17Oct 3, 2022Updated 4 years ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 9 months ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆18Jan 26, 2026Updated 9 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Aug 26, 2026Updated 2 months ago
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated last year
- ☆10May 12, 2020Updated 6 years ago
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated 2 years ago
- A lightweight and flexible analysis pipeline☆12Jun 18, 2026Updated 4 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 5 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆23Oct 8, 2025Updated last year
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 3 months ago