Alternatives and similar repositories for SeuratWizard

Users that are interested in SeuratWizard are comparing it to the libraries listed below

• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆19Updated 4 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆76Updated 2 years ago
• massonix / tabula_muris_networks
  R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)
  ☆12Updated 4 years ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆64Updated 5 months ago
• neuhausi / single-cell-viewer
  R package to visualize scRNA sequencing data.
  ☆20Updated 4 years ago
• kimpenn / VisCello
  Viscello for Visualization of Single Cell Data
  ☆25Updated last year
• elimereu / matchSCore2
  ☆56Updated 5 years ago
• romanhaa / cerebroApp
  R package containing the Cerebro application.
  ☆40Updated 4 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 7 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆42Updated 4 years ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆50Updated 2 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆62Updated last year
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated last month
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆53Updated 2 years ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆36Updated last year
• ToledoEM / msigdf
  Molecular Signatures Database (MSigDB) in a tidy data frame
  ☆26Updated last week
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆41Updated 4 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆44Updated 6 years ago
• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• aselewa / dropseqRunner
  Lightweight pipeline for processing droplet-based single-cell RNA-seq data
  ☆18Updated 5 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆58Updated last year
• BaderLab / singleLiverCells
  Scripts for processing single liver cells RNA-Seq 10X Genomics Data
  ☆26Updated 7 years ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 3 years ago
• xgaoo / ClusterMap
  ClusterMap is an R package to analyze and compare two or more single cell expression datasets.
  ☆20Updated 3 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago