nasqar / SeuratWizardLinks
This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.
☆13Updated 5 years ago
Alternatives and similar repositories for SeuratWizard
Users that are interested in SeuratWizard are comparing it to the libraries listed below
Sorting:
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Toolbox with R scripts☆38Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆38Updated 2 years ago
- Identify and correct invalid gene symbols☆58Updated 7 months ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- ☆40Updated 7 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 5 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- Utility functions for FACETS☆36Updated last year
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆9Updated 7 years ago